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SCNpilot_cont_750_bf_scaffold_4136

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_4136_1
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1061
DNA (1059bp) protein (353aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
ribonuclease; K08300 ribonuclease E [EC:3.1.26.12]
Ribonuclease E n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HL87_9BRAD
SCNpilot_cont_750_bf_scaffold_4136_2
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1112..2437)
DNA (1326bp) protein (442aa)
C4-dicarboxylate transport protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TD01_9BRAD rbh
C4-dicarboxylate transport protein {ECO:0000256|HAMAP-Rule:MF_01300}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
dctA; C4-dicarboxylate transport protein; K11103 aerobic C4-dicarboxylate transport protein rbh
SCNpilot_cont_750_bf_scaffold_4136_3
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2607..3722)
DNA (1116bp) protein (372aa)
aminotransferase (EC:2.6.1.-)
Aminotransferase {ECO:0000313|EMBL:ABQ36263.1}; EC=2.6.1.- {ECO:0000313|EMBL:ABQ36263.1};; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Aminotransferase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EJB9_BRASB
SCNpilot_cont_750_bf_scaffold_4136_4
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3802..5247
DNA (1446bp) protein (482aa)
peptidase M48 Ste24p n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003626417
Bradyrhizobium elkanii strain UASWS1015 Contig178, whole genome shotgun sequence {ECO:0000313|EMBL:KIU47959.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
peptidase M48 Ste24p rbh
SCNpilot_cont_750_bf_scaffold_4136_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5287..6054
DNA (768bp) protein (256aa)
DSBA oxidoreductase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLB9_NITHX
DSBA oxidoreductase {ECO:0000313|EMBL:KIZ37594.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
DSBA oxidoreductase
SCNpilot_cont_750_bf_scaffold_4136_6
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6312..6767
DNA (456bp) protein (152aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
3-dehydroquinate dehydratase; K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
3-dehydroquinate dehydratase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYR0_9BRAD
SCNpilot_cont_750_bf_scaffold_4136_7
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6812..7300
DNA (489bp) protein (163aa)
Acetyl-CoA carboxylase, biotin carboxyl carrier protein subunit {ECO:0000313|EMBL:CCD89521.1}; EC=6.4.1.2 {ECO:0000313|EMBL:CCD89521.1};; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein subunit (EC:6.4.1.2); K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein
acetyl-CoA carboxylase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037BBA46
SCNpilot_cont_750_bf_scaffold_4136_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7498..8655
DNA (1158bp) protein (386aa)
acetyl-CoA carboxylase, biotin carboxylase; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
acetyl-CoA carboxylase biotin carboxylase subunit n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034A87BE
Acetyl-CoA carboxylase, biotin carboxylase {ECO:0000313|EMBL:ADU44655.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_750_bf_scaffold_4136_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8867..10333
DNA (1467bp) protein (489aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PG37_9BRAD
multi-sensor signal transduction histidine kinase
SCNpilot_cont_750_bf_scaffold_4136_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10330..10770
DNA (441bp) protein (147aa)
Response regulator receiver domain protein (CheY-like) n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLB4_NITHX
response regulator receiver domain-containing protein
Response regulator receiver domain protein (CheY-like) {ECO:0000313|EMBL:ABE62983.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_4136_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10767..11858
DNA (1092bp) protein (364aa)
Signal transduction histidine kinase {ECO:0000313|EMBL:ABD88420.1}; EC=2.7.3.- {ECO:0000313|EMBL:ABD88420.1};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Signal transduction histidine kinase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q213L6_RHOPB
signal transduction histidine kinase
SCNpilot_cont_750_bf_scaffold_4136_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11889..12575
DNA (687bp) protein (229aa)
aat; leucyl/phenylalanyl-tRNA--protein transferase; K00684 leucyl/phenylalanyl-tRNA--protein transferase [EC:2.3.2.6]
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000255|HAMAP-Rule:MF_00688}; EC=2.3.2.6 {ECO:0000255|HAMAP-Rule:MF_00688};; L/F-transferase {ECO:0000255|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000255|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000255|HAMAP-Rule:MF_00688}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=LFTR_RHOP5
SCNpilot_cont_750_bf_scaffold_4136_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12591..13076)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMC2_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62625.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_4136_14
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13664..14440
DNA (777bp) protein (259aa)
oxidoreductase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00035E16FF rbh
Oxidoreductase {ECO:0000313|EMBL:KJC35404.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
putative levodione reductase
SCNpilot_cont_750_bf_scaffold_4136_15
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14499..15410
DNA (912bp) protein (304aa)
acetyl hydrolase n=1 Tax=Afipia birgiae RepID=UPI0003059B7B
Lipase/esterase {ECO:0000313|EMBL:EGP08338.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
putative lipase/esterase
Displaying 15 items

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