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SCNpilot_cont_750_bf_scaffold_4143

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_4143_1
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..156
DNA (156bp) protein (52aa)
GTPase Der n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WZF7_9BRAD
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
engA; GTP-binding protein EngA; K03977 GTP-binding protein
SCNpilot_cont_750_bf_scaffold_4143_2
unknown

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comp(179..295)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_4143_3
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(315..1541)
DNA (1227bp) protein (409aa)
ABC transporter permease n=1 Tax=Bradyrhizobium elkanii RepID=UPI00030BD477
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EHR02816.1}; Flags: Precursor;; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
hypothetical protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_cont_750_bf_scaffold_4143_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1780..2154)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07LB0_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ07274.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_750_bf_scaffold_4143_5
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2333..3082)
DNA (750bp) protein (250aa)
Transmembrane sensor n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1ICC7_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig183, whole genome shotgun sequence {ECO:0000313|EMBL:KIU45905.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_750_bf_scaffold_4143_6
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3137..3658
DNA (522bp) protein (174aa)
GCN5-related N-acetyltransferase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SR14_NITWN
N-acetyltransferase
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ABA05277.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_750_bf_scaffold_4143_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3659..5179)
DNA (1521bp) protein (507aa)
amidophosphoribosyltransferase; K00764 amidophosphoribosyltransferase [EC:2.4.2.14]
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodops
Amidophosphoribosyltransferase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q215V0_RHOPB
SCNpilot_cont_750_bf_scaffold_4143_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5223..5855)
DNA (633bp) protein (211aa)
Colicin V production protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q135L7_RHOPS
colicin V production protein; K03558 membrane protein required for colicin V production
Colicin V production protein {ECO:0000313|EMBL:ABE40222.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_750_bf_scaffold_4143_9
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5905..7407)
DNA (1503bp) protein (501aa)
DNA repair protein radA n=1 Tax=Bradyrhizobium sp. STM 3843 PF9_9BRAD">RepID=H0TPF9_9BRAD rbh
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
radA; DNA repair protein RadA; K04485 DNA repair protein RadA/Sms rbh
SCNpilot_cont_750_bf_scaffold_4143_10
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7423..8154)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YT53_BRASO
hypothetical protein; K07090
Uncharacterized protein {ECO:0000313|EMBL:CAL77079.1}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
SCNpilot_cont_750_bf_scaffold_4143_11
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8236..9414)
DNA (1179bp) protein (393aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608};; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
alanine racemase (EC:5.1.1.1); K01775 alanine racemase [EC:5.1.1.1]
Alanine racemase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WZE4_9BRAD
SCNpilot_cont_750_bf_scaffold_4143_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9548..10357)
DNA (810bp) protein (270aa)
replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12]
Primary replicative DNA helicase {ECO:0000313|EMBL:ABD87844.1}; EC=3.6.1.- {ECO:0000313|EMBL:ABD87844.1};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Primary replicative DNA helicase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q215U2_RHOPB
SCNpilot_cont_750_bf_scaffold_4143_13
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10327..10989)
DNA (663bp) protein (221aa)
Replicative DNA helicase {ECO:0000313|EMBL:EGP08001.1}; EC=3.6.1.- {ECO:0000313|EMBL:EGP08001.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Replicative DNA helicase n=2 Tax=Bradyrhizobiaceae RepID=F7QLZ8_9BRAD
putative replicative DNA helicase, DnaB
SCNpilot_cont_750_bf_scaffold_4143_14
unknown

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comp(11472..11681)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_4143_15
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11678..12928)
DNA (1251bp) protein (417aa)
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79); K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:ABE63079.1}; EC=2.1.1.79 {ECO:0000313|EMBL:ABE63079.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QL18_NITHX
SCNpilot_cont_750_bf_scaffold_4143_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13329..14207
DNA (879bp) protein (293aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q215U0_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD87846.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_750_bf_scaffold_4143_17
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14349..14951)
DNA (603bp) protein (201aa)
50S ribosomal protein L9 n=2 Tax=Bradyrhizobiaceae RepID=F7QM07_9BRAD
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
rplI; 50S ribosomal protein L9; K02939 large subunit ribosomal protein L9 rbh
SCNpilot_cont_750_bf_scaffold_4143_18
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15011..15988)
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G9D9_9BRAD
Membrane protein {ECO:0000313|EMBL:KJC55323.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_4143_19
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16114..16296)
DNA (183bp) protein (61aa)
30S ribosomal protein S18 n=4 Tax=Bradyrhizobiaceae RepID=RS18_RHOPB
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Displaying 19 items

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