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SCNpilot_cont_750_bf_scaffold_4301

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_4301_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..810
DNA (810bp) protein (270aa)
branched-chain alpha-keto acid dehydrogenase subunit E2 (EC:2.3.1.61); K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
Dihydrolipoamide acetyltransferase, long form n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q136F2_RHOPS
SCNpilot_cont_750_bf_scaffold_4301_2
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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812..2233
DNA (1422bp) protein (474aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
Dihydrolipoyl dehydrogenase n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89KX2_BRADU
SCNpilot_cont_750_bf_scaffold_4301_3
Aeromonas media, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2282..3748)
DNA (1467bp) protein (489aa)
Diguanylate cyclase n=1 Tax=Aeromonas media WS RepID=K2I2S9_AERME rbh
Diguanylate cyclase {ECO:0000313|EMBL:AHX59960.1}; TaxID=1208104 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas media WS.;"
diguanylate cyclase rbh
SCNpilot_cont_750_bf_scaffold_4301_4
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4074..5072
DNA (999bp) protein (333aa)
hypothetical protein; K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
Dihydroxy-acid dehydratase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HLH0_9BRAD
SCNpilot_cont_750_bf_scaffold_4301_5
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5029..5727
DNA (699bp) protein (233aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein; K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HLH0_9BRAD
SCNpilot_cont_750_bf_scaffold_4301_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5714..6529
DNA (816bp) protein (272aa)
Sel1-like n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q214Z0_RHOPB
Sel1-like protein; K07126
Sel1-like {ECO:0000313|EMBL:ABD88046.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_750_bf_scaffold_4301_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6555..7346)
DNA (792bp) protein (264aa)
exodeoxyribonuclease III; K01142 exodeoxyribonuclease III [EC:3.1.11.2]
Exodeoxyribonuclease III n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07NC4_RHOP5
Exodeoxyribonuclease III {ECO:0000313|EMBL:KIZ47368.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_750_bf_scaffold_4301_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7737..9137
DNA (1401bp) protein (467aa)
Putative Omp2b porin n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13EC8_RHOPS
putative Omp2b porin
Putative Omp2b porin {ECO:0000313|EMBL:ABE37561.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_750_bf_scaffold_4301_9
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9493..10623
DNA (1131bp) protein (377aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IN26_9BRAD
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ERF85305.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
secretion protein HlyD rbh
SCNpilot_cont_750_bf_scaffold_4301_10
unknown

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comp(10563..10853)
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_4301_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11435..13603
DNA (2169bp) protein (723aa)
Acriflavin resistance protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q136F9_RHOPS
Acriflavine resistance protein B {ECO:0000313|EMBL:KIZ47366.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
acriflavin resistance protein
SCNpilot_cont_750_bf_scaffold_4301_12
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13618..13950)
DNA (333bp) protein (111aa)
Iron-sulfur cluster assembly accessory protein n=2 Tax=Bradyrhizobiaceae RepID=K8PLH4_9BRAD
Iron-sulfur cluster assembly accessory protein {ECO:0000313|EMBL:EKS40350.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
HesB/YadR/YfhF
SCNpilot_cont_750_bf_scaffold_4301_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14083..15168
DNA (1086bp) protein (362aa)
dgt; deoxyguanosinetriphosphate triphosphohydrolase; K01129 dGTPase [EC:3.1.5.1]
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G772_9BRAD
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_750_bf_scaffold_4301_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15240..16592
DNA (1353bp) protein (451aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
argS; arginyl-tRNA synthetase; K01887 arginyl-tRNA synthetase [EC:6.1.1.19]
Arginine--tRNA ligase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=SYR_RHOPB
Displaying 14 items

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