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SCNpilot_cont_750_bf_scaffold_3843

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_3843_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..401
DNA (399bp) protein (133aa)
Na+/H+ antiporter n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P970_9BRAD
Na+/H+ antiporter {ECO:0000313|EMBL:EKS37339.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Na+/H+ antiporter; K03316 monovalent cation:H+ antiporter, CPA1 family
SCNpilot_cont_750_bf_scaffold_3843_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(534..1793)
DNA (1260bp) protein (420aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1]
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000255|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000255|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000255|HAMAP-Rule:MF_00159}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=ISPG_NITHX
SCNpilot_cont_750_bf_scaffold_3843_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1807..2748)
DNA (942bp) protein (314aa)
Permeases of the drug/metabolite transporter (DMT) superfamily n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6NCF4_RHOPA
Multidrug DMT transporter permease {ECO:0000313|EMBL:KIZ33845.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_3843_4
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2838..3329)
DNA (492bp) protein (164aa)
Fur family transcriptional regulator, zinc uptake regulator n=2 Tax=Bradyrhizobium RepID=U1HEK8_9BRAD
Fur family transcriptional regulator, zinc uptake regulator {ECO:0000313|EMBL:ERF82906.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
transcriptional regulatory protein Ferric uptake; K09823 Fur family transcriptional regulator, zinc uptake regulator
SCNpilot_cont_750_bf_scaffold_3843_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3495..4655
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PG54_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37343.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
putative esterase; K07001 NTE family protein
SCNpilot_cont_750_bf_scaffold_3843_6
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4910..5395
DNA (486bp) protein (162aa)
Transcriptional regulator, MarR family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQJ1_NITHX
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABE61506.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_3843_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5388..6572
DNA (1185bp) protein (395aa)
Secretion protein HlyD n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQJ2_NITHX
secretion protein HlyD; K03543 multidrug resistance protein A
Secretion protein HlyD {ECO:0000313|EMBL:ABE61505.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_3843_8
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6575..8044
DNA (1470bp) protein (490aa)
Drug resistance transporter EmrB/QacA subfamily n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQJ3_NITHX
EmrB/QacA family drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B
Drug resistance transporter EmrB/QacA subfamily {ECO:0000313|EMBL:ABE61504.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_3843_9
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8069..8656)
DNA (588bp) protein (196aa)
protocatechuate 3,4-dioxygenase alpha chain; K00448 protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
protocatechuate 3,4-dioxygenase subunit alpha n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003819379
Protocatechuate 3,4-dioxygenase {ECO:0000313|EMBL:KJC51630.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_cont_750_bf_scaffold_3843_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8656..9357)
DNA (702bp) protein (234aa)
protocatechuate 3,4-dioxygenase subunit beta; K00449 protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
Protocatechuate 3,4-dioxygenase, beta subunit n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PA67_9BRAD
Protocatechuate 3,4-dioxygenase, beta subunit {ECO:0000313|EMBL:EKS36505.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_cont_750_bf_scaffold_3843_11
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9430..10281)
DNA (852bp) protein (284aa)
beta-ketoadipyl CoA thiolase; K07823 3-oxoadipyl-CoA thiolase [EC:2.3.1.174]
Beta-ketoadipyl CoA thiolase n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DKX8_BRAJP
Beta-ketoadipyl CoA thiolase {ECO:0000313|EMBL:AHY55400.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
SCNpilot_cont_750_bf_scaffold_3843_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10278..10571)
DNA (294bp) protein (98aa)
pcaF; beta-ketoadipyl CoA thiolase; K07823 3-oxoadipyl-CoA thiolase [EC:2.3.1.174]
Beta-ketoadipyl CoA thiolase n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GH26_9BRAD
Beta-ketoadipyl CoA thiolase {ECO:0000313|EMBL:KIZ33841.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_750_bf_scaffold_3843_13
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10819..11337
DNA (519bp) protein (173aa)
DNA mismatch repair protein MutS n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WRE5_9BRAD
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS
SCNpilot_cont_750_bf_scaffold_3843_14
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11283..13145
DNA (1863bp) protein (621aa)
DNA mismatch repair protein MutS n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YKT1_9BRAD
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
mutS; DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS
Displaying 14 items

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