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SCNpilot_cont_750_bf_scaffold_17551

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_17551_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..467
DNA (465bp) protein (155aa)
Probable GTP-binding protein EngB n=1 Tax=Afipia felis ATCC 53690 RepID=K8NTJ0_AFIFE
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
engB; GTP-binding protein; K03978 GTP-binding protein
SCNpilot_cont_750_bf_scaffold_17551_2
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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464..850
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQQ1_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30734.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_17551_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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935..1822
DNA (888bp) protein (296aa)
argB; acetylglutamate kinase ArgB (EC:2.7.2.8); K00930 acetylglutamate kinase [EC:2.7.2.8] rbh
Acetylglutamate kinase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NX29_AFIFE rbh
Acetylglutamate kinase {ECO:0000313|EMBL:EKS30733.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_cont_750_bf_scaffold_17551_4
unknown

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comp(1785..2129)
DNA (345bp) protein (115aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_17551_5
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2164..2490
DNA (327bp) protein (109aa)
Pyrimidine 5'-nucleotidase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4Q4_9BRAD
Pyrimidine 5'-nucleotidase {ECO:0000313|EMBL:CEG10668.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
pyrimidine 5'-nucleotidase; K07025 putative hydrolase of the HAD superfamily
SCNpilot_cont_750_bf_scaffold_17551_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2592..3437
DNA (846bp) protein (282aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
dapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase (EC:2.3.1.117); K00674 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117] rbh
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNP9_AFIFE rbh
SCNpilot_cont_750_bf_scaffold_17551_7
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3655..4524
DNA (870bp) protein (290aa)
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082787}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
dapE; succinyl-diaminopimelate desuccinylase (EC:3.5.1.18); K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
Succinyl-diaminopimelate desuccinylase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NTH6_AFIFE
SCNpilot_cont_750_bf_scaffold_17551_8
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4535..5011
DNA (477bp) protein (159aa)
putative nucleoside phosphorylase; K01243 S-adenosylhomocysteine/5'-methylthioadenosine nucleosidase [EC:3.2.2.9]
Purine or other phosphorylase family 1 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4Q7_9BRAD
Purine or other phosphorylase family 1 {ECO:0000313|EMBL:EFI52937.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_cont_750_bf_scaffold_17551_9
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5034..5351)
DNA (318bp) protein (106aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
truA; tRNA pseudouridine synthase A (EC:5.4.99.12); K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
tRNA pseudouridine synthase A n=1 Tax=Afipia felis ATCC 53690 RepID=K8NX13_AFIFE
SCNpilot_cont_750_bf_scaffold_17551_10
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5470..5709)
DNA (240bp) protein (80aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
truA; tRNA pseudouridine synthase A (EC:5.4.99.12); K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
tRNA pseudouridine synthase A n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4Q8_9BRAD
SCNpilot_cont_750_bf_scaffold_17551_11
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5709..6641)
DNA (933bp) protein (311aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
fmt; methionyl-tRNA formyltransferase Fmt (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] rbh
Methionyl-tRNA formyltransferase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4Q9_9BRAD rbh
SCNpilot_cont_750_bf_scaffold_17551_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6653..7189)
DNA (537bp) protein (179aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
def; peptide deformylase Def (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88] rbh
Peptide deformylase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNN3_AFIFE rbh
Displaying 12 items

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