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SCNpilot_cont_750_bf_scaffold_10073

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_10073_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..503
DNA (501bp) protein (167aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
periplasmic sensor signal transduction histidine kinase; K07645 two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QWE6_METTR
SCNpilot_cont_750_bf_scaffold_10073_2
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(487..981)
DNA (495bp) protein (165aa)
DoxX domain n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E786
DoxX family protein
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_cont_750_bf_scaffold_10073_3
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1027..1806)
DNA (780bp) protein (260aa)
Putative permease n=1 Tax=Rhizobium sp. CF142 RepID=J2L4N0_9RHIZ
Putative permease {ECO:0000313|EMBL:EJJ28457.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein; K07090
SCNpilot_cont_750_bf_scaffold_10073_4
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2175..2597)
DNA (423bp) protein (141aa)
Transmembrane protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3K8Z9_9RHIZ
Transmembrane protein {ECO:0000313|EMBL:EMG51349.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
hypothetical protein; K07112
SCNpilot_cont_750_bf_scaffold_10073_5
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2610..3017)
DNA (408bp) protein (136aa)
ArsR family transcriptional regulator n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003AA66CA
Transcriptional activator hlyU {ECO:0000313|EMBL:EGF96389.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hlyU; Biofilm growth-associated repressor
SCNpilot_cont_750_bf_scaffold_10073_6
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3014..3913)
DNA (900bp) protein (300aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I1B6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFB09250.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_10073_7
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3910..4587)
DNA (678bp) protein (226aa)
peroxiredoxin (EC:1.11.1.15); K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]
Peroxiredoxin {ECO:0000313|EMBL:ACB95563.1}; EC=1.11.1.15 {ECO:0000313|EMBL:ACB95563.1};; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
Peroxiredoxin n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IEG5_BEII9
SCNpilot_cont_750_bf_scaffold_10073_8
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5057..5920
DNA (864bp) protein (288aa)
FAD-dependent pyridine nucleotide-disulphide oxidoreductase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IEG4_BEII9
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
FAD-dependent pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:ACB95562.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_750_bf_scaffold_10073_9
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5946..6245
DNA (300bp) protein (100aa)
FAD-dependent pyridine nucleotide-disulphide oxidoreductase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IEG4_BEII9
Oxidoreductase {ECO:0000313|EMBL:GAN76982.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
SCNpilot_cont_750_bf_scaffold_10073_10
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6325..6543
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I766_AZOC5
Transmembrane protein {ECO:0000313|EMBL:KJV11070.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_10073_11
unknown

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6528..6692
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_10073_12
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6834..7550
DNA (717bp) protein (239aa)
Extracellular solute-binding protein n=1 Tax=Burkholderia cepacia GG4 RepID=J7JI93_BURCE
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KHK49019.1}; TaxID=1217052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. A12.;"
extracellular solute-binding protein
SCNpilot_cont_750_bf_scaffold_10073_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8434..10278)
DNA (1845bp) protein (615aa)
TRAG protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFH7_NITHX
TRAG protein; K03205 type IV secretion system protein VirD4
TRAG protein {ECO:0000313|EMBL:ABE65020.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_10073_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10337..10513)
DNA (177bp) protein (59aa)
TRAG protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFH7_NITHX
Conjugal transfer protein TraG {ECO:0000313|EMBL:KIZ46688.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
TRAG protein; K03205 type IV secretion system protein VirD4
SCNpilot_cont_750_bf_scaffold_10073_15
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10491..11549)
DNA (1059bp) protein (353aa)
P-type DNA transfer ATPase VirB11 n=2 Tax=Oligotropha carboxidovorans RepID=B6JK52_OLICO
virB11; type IV secretion protein VirB11; K03196 type IV secretion system protein VirB11
Type IV secretion protein VirB11 {ECO:0000313|EMBL:AEI08308.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_bf_scaffold_10073_16
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11512..12858)
DNA (1347bp) protein (449aa)
Conjugal transfer protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JK51_OLICO
virB10; type IV secretion protein VirB10; K03195 type IV secretion system protein VirB10
Type IV secretion protein VirB10 {ECO:0000313|EMBL:AEI08309.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_bf_scaffold_10073_17
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12861..13373)
DNA (513bp) protein (171aa)
P-type conjugative transfer protein VirB9 n=2 Tax=Oligotropha carboxidovorans RepID=B6JK50_OLICO
virB9; type IV secretion protein VirB9; K03204 type IV secretion system protein VirB9
Type IV secretion protein VirB9 {ECO:0000313|EMBL:AEI08310.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Displaying 17 items

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