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SCNpilot_cont_750_bf_scaffold_108

Search features with annotation key words

Displaying items 1-30 of 204 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_108_1
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..892)
DNA (891bp) protein (297aa)
Nodulation protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UZZ7_9RHIZ rbh
Nodulation protein {ECO:0000313|EMBL:ENN84457.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
TolC/NodT family protein rbh
SCNpilot_cont_750_bf_scaffold_108_2
unknown

Not on your lists

comp(1132..1350)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_108_3
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1416..1814)
DNA (399bp) protein (133aa)
Transcriptional regulator protein (Repressor of nodulation genes) n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JHR8_AGRRK
nolRch; transcriptional regulator protein (repressor of nodulation genes)
Putative transcriptional regulator {ECO:0000313|EMBL:EJK79845.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_cont_750_bf_scaffold_108_4
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1945..2793
DNA (849bp) protein (283aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component n=1 Tax=Rhizobium sp. AP16 RepID=J2KXK0_9RHIZ rbh
ABC transporter {ECO:0000313|EMBL:KEA08217.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
ABC transporter; K02051 NitT/TauT family transport system substrate-binding protein rbh
SCNpilot_cont_750_bf_scaffold_108_5
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2795..3931
DNA (1137bp) protein (379aa)
ssuD; alkanesulfonate monooxygenase; K04091 alkanesulfonate monooxygenase [EC:1.14.14.5] rbh
Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase n=1 Tax=Rhizobium sp. AP16 RepID=J2DAV6_9RHIZ rbh
Alkanesulfonate monooxygenase {ECO:0000313|EMBL:GAJ93595.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_cont_750_bf_scaffold_108_6
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3924..4760
DNA (837bp) protein (279aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Rhizobium sp. AP16 RepID=J2WAI5_9RHIZ rbh
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:EJK79848.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
aliphatic sulphonate ABC transporter; K15554 sulfonate transport system permease protein rbh
SCNpilot_cont_750_bf_scaffold_108_7
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4757..5461
DNA (705bp) protein (235aa)
aliphatic sulphonate ABC transporter; K15555 sulfonate transport system ATP-binding protein [EC:3.6.3.-] rbh
Aliphatic sulfonates import ATP-binding protein SsuB {ECO:0000256|HAMAP-Rule:MF_01724}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01724};; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
Aliphatic sulphonate ABC transporter n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JHS2_AGRRK rbh
SCNpilot_cont_750_bf_scaffold_108_8
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5510..6463
DNA (954bp) protein (318aa)
ABC transporter, substrate-binding protein, aliphatic sulfonates family n=1 Tax=Rhizobium sp. AP16 RepID=J2WB47_9RHIZ rbh
Aliphatic sulfonate ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAJ93598.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
aliphatic sulfonate ABC transporter substrate-binding protein; K15553 sulfonate transport system substrate-binding protein rbh
SCNpilot_cont_750_bf_scaffold_108_9
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6638..7279)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U7W0_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:ENN88644.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
transglutaminase family protein cysteine peptidase BTLCP
SCNpilot_cont_750_bf_scaffold_108_10
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7545..9419)
DNA (1875bp) protein (625aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000375DBEE rbh
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
trkD; KUP family potassium transport system low affinity; K03549 KUP system potassium uptake protein
SCNpilot_cont_750_bf_scaffold_108_11
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10118..11773
DNA (1656bp) protein (552aa)
manganese transporter n=1 Tax=Burkholderia thailandensis RepID=UPI00016A9536 rbh
Natural resistance-associated macrophage family protein {ECO:0000313|EMBL:KGS01512.1}; TaxID=1434929 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei ABCPW 111.;"
manganese/iron transporter rbh
SCNpilot_cont_750_bf_scaffold_108_12
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12394..14244
DNA (1851bp) protein (617aa)
Putative methyl-accepting chemotaxis protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U6F5_9RHIZ rbh
Putative methyl-accepting chemotaxis protein {ECO:0000313|EMBL:ENN88179.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
methyl-accepting chemotaxis protein rbh
SCNpilot_cont_750_bf_scaffold_108_13
unknown

Not on your lists

comp(14382..14615)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_108_14
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14898..16289)
DNA (1392bp) protein (464aa)
Aldehyde dehydrogenase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HEF4_9RHIZ rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:EPE97197.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
aldehyde dehydrogenase rbh
SCNpilot_cont_750_bf_scaffold_108_15
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16279..17937)
DNA (1659bp) protein (553aa)
acetolactate synthase; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] rbh
Acetolactate synthase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3IDN2_9RHIZ rbh
Acetolactate synthase {ECO:0000313|EMBL:EPE97198.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_cont_750_bf_scaffold_108_16
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18317..18520
DNA (204bp) protein (68aa)
Cold-shock protein CspA n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LWR0_RHITR
cspA1; cold-shock protein CspA
Cold-shock protein CspA {ECO:0000313|EMBL:AGB75682.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_bf_scaffold_108_17
unknown

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comp(18700..19245)
DNA (546bp) protein (182aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_108_18
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19372..19638)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Rhizobium radiobacter RepID=K7WT95_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:KEA03068.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_108_19
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19786..20499)
DNA (714bp) protein (238aa)
Oxidoreductase, short chain dehydrogenase/reductase family n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2H8E5_BURVI rbh
Oxidoreductase, short chain dehydrogenase/reductase family {ECO:0000313|EMBL:ERJ34463.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_cont_750_bf_scaffold_108_20
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20605..21558
DNA (954bp) protein (318aa)
Transcriptional regulator, LysR family n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T7D9_CAUSK
LysR family transcriptional regulator {ECO:0000313|EMBL:KGM34727.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
LysR family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_108_21
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21619..22182
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U1F5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN84188.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_108_22
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22316..22966
DNA (651bp) protein (217aa)
Putative glutathione S-transferase I {ECO:0000313|EMBL:CCM74317.1}; EC=2.5.1.18 {ECO:0000313|EMBL:CCM74317.1};; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
glutathione S-transferase (EC:2.5.1.18); K00799 glutathione S-transferase [EC:2.5.1.18] rbh
Putative glutathione S-transferase I n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PT48_9RHIZ rbh
SCNpilot_cont_750_bf_scaffold_108_23
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23024..23617)
DNA (594bp) protein (198aa)
Transcriptional regulator, TetR family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVG4_RHITR rbh
transcriptional regulator, TetR family rbh
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AGB74139.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_bf_scaffold_108_24
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23753..24976
DNA (1224bp) protein (408aa)
ABC transporter, membrane spanning protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LS75_RHITR rbh
ABC transporter, membrane spanning protein rbh
ABC transporter, membrane spanning protein {ECO:0000313|EMBL:AGB74138.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_bf_scaffold_108_25
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25027..25584)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3I2S3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGE00557.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_108_26
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25713..26801
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3H5N7_9RHIZ
Luciferase {ECO:0000313|EMBL:KGE00556.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_108_27
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26823..27794)
DNA (972bp) protein (324aa)
Inner-membrane translocator n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ET13_9RHIZ
Inner-membrane translocator {ECO:0000313|EMBL:CCV07150.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein
SCNpilot_cont_750_bf_scaffold_108_28
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27791..28744)
DNA (954bp) protein (318aa)
UPI0003CDFEE3 related cluster n=1 Tax=unknown RepID=UPI0003CDFEE3
ABC transporter permease {ECO:0000313|EMBL:ESY69162.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
inner-membrane translocator
SCNpilot_cont_750_bf_scaffold_108_29
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28741..29490)
DNA (750bp) protein (250aa)
UPI0003CEEF2E related cluster n=1 Tax=unknown RepID=UPI0003CEEF2E
Uncharacterized protein {ECO:0000313|EMBL:ESW87687.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
ABC transporter
SCNpilot_cont_750_bf_scaffold_108_30
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29483..30220)
DNA (738bp) protein (246aa)
UPI0003CF9451 related cluster n=1 Tax=unknown RepID=UPI0003CF9451
ABC transporter related protein {ECO:0000313|EMBL:CDX12354.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
ABC transporter
Displaying items 1-30 of 204 in total

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