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SCNpilot_cont_750_bf_scaffold_489

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_489_1
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..625)
DNA (624bp) protein (208aa)
Putative epimerase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U4N3_9RHIZ
Putative epimerase {ECO:0000313|EMBL:ENN87559.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
galactonate dehydratase protein
SCNpilot_cont_750_bf_scaffold_489_2
unknown

Not on your lists

645..1274
DNA (630bp) protein (210aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_489_3
unknown

Not on your lists

1686..2306
DNA (621bp) protein (207aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_489_4
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2313..3203)
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003638F24 rbh
Aldose 1-epimerase rbh
Aldose 1-epimerase {ECO:0000313|EMBL:ACS61001.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_cont_750_bf_scaffold_489_5
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3212..4216)
DNA (1005bp) protein (335aa)
sugar ABC transporter permease n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003700CEF rbh
Sugar ABC transporter permease protein {ECO:0000313|EMBL:AJD44294.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein rbh
SCNpilot_cont_750_bf_scaffold_489_6
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4228..5757)
DNA (1530bp) protein (510aa)
ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17] rbh
heme ABC transporter ATP-binding protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00035CD53E rbh
ABC transporter {ECO:0000313|EMBL:EPE94217.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_cont_750_bf_scaffold_489_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5830..6810)
DNA (981bp) protein (327aa)
sugar ABC transporter substrate-binding protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037CD16D rbh
periplasmic binding protein/LacI transcriptional regulator; K02058 simple sugar transport system substrate-binding protein rbh
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:ACS61004.1}; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_cont_750_bf_scaffold_489_8
unknown

Not on your lists

comp(6825..7004)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_489_9
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7106..7879
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00037794C0 rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:EPE94219.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
GntR family transcriptional regulator rbh
SCNpilot_cont_750_bf_scaffold_489_10
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7982..9262)
DNA (1281bp) protein (427aa)
LolC/E family lipoprotein releasing system, transmembrane protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C214_9RHIZ
LolC/E family lipoprotein releasing system, transmembrane protein {ECO:0000313|EMBL:EIM75866.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
LolC/E family lipoprotein releasing system, transmembrane protein; K09808 lipoprotein-releasing system permease protein
SCNpilot_cont_750_bf_scaffold_489_11
unknown

Not on your lists

comp(9259..9576)
DNA (318bp) protein (106aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_489_12
Komagataeibacter xylinus, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9763..10332)
DNA (570bp) protein (190aa)
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=1296990 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter xylinus E25.;"
hypothetical protein n=1 Tax=Gluconacetobacter europaeus RepID=UPI0002D32D72
phenylacrylic acid decarboxylase
SCNpilot_cont_750_bf_scaffold_489_13
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10344..11717)
DNA (1374bp) protein (458aa)
4-hydroxybenzoate decarboxylase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LW63_RHITR
3-octaprenyl-4-hydroxybenzoate carboxy-lyase {ECO:0000313|EMBL:KJC56900.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
4-hydroxybenzoate decarboxylase
SCNpilot_cont_750_bf_scaffold_489_14

Not on your lists

comp(11727..13241)
DNA (1515bp) protein (505aa)
Histidine ammonia-lyase {ECO:0000313|EMBL:EKD61627.1}; EC=4.3.1.3 {ECO:0000313|EMBL:EKD61627.1};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
putative histidine ammonia-lyase; K01745 histidine ammonia-lyase [EC:4.3.1.3]
Histidine ammonia-lyase n=1 Tax=uncultured bacterium RepID=K2AJ08_9BACT
SCNpilot_cont_750_bf_scaffold_489_15
Komagataeibacter xylinus, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13335..14582
DNA (1248bp) protein (416aa)
Transcriptional regulator, LysR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2H2_9RHIZ
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AHI24033.1}; TaxID=1296990 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter xylinus E25.;"
transcriptional regulator, LysR family
SCNpilot_cont_750_bf_scaffold_489_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14796..16412
DNA (1617bp) protein (539aa)
Alcohol dehydrogenase {ECO:0000313|EMBL:EYR81282.1}; EC=1.1.99.- {ECO:0000313|EMBL:EYR81282.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Alcohol dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZ64_9RHIZ rbh
GMC family oxidoreductase rbh
SCNpilot_cont_750_bf_scaffold_489_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16446..17948)
DNA (1503bp) protein (501aa)
Transcriptional regulator, GntR family with aminotransferase domain-containing protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F5V3_9RHIZ rbh
Putative rhizopine catabolism regulatory protein MocR {ECO:0000313|EMBL:EYR81283.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GntR family transcriptional regulator/MocR family aminotransferase
SCNpilot_cont_750_bf_scaffold_489_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18130..19236
DNA (1107bp) protein (369aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWN0_9RHIZ rbh
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:EYR81284.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
racemase rbh
SCNpilot_cont_750_bf_scaffold_489_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19238..20728
DNA (1491bp) protein (497aa)
Aldehyde dehydrogenase {ECO:0000313|EMBL:EYR81285.1}; EC=1.2.99.3 {ECO:0000313|EMBL:EYR81285.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
betaine-aldehyde dehydrogenase (EC:1.2.1.8) rbh
Aldehyde dehydrogenase family protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NXN1_9RHOB rbh
SCNpilot_cont_750_bf_scaffold_489_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20899..21978
DNA (1080bp) protein (360aa)
Spermidine/putrescine-binding periplasmic protein 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXM8_9RHIZ rbh
Spermidine/putrescine-binding periplasmic protein 2 {ECO:0000313|EMBL:EYR81286.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
spermidine/putrescine-binding, periplasmic protein rbh
SCNpilot_cont_750_bf_scaffold_489_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22146..23219
DNA (1074bp) protein (358aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000313|EMBL:EYR81287.1}; EC=3.6.3.31 {ECO:0000313|EMBL:EYR81287.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
spermidine/putrescine transport system, ATP-binding protein (EC:3.6.3.31) rbh
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGJ7_9RHIZ rbh
SCNpilot_cont_750_bf_scaffold_489_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23225..24094
DNA (870bp) protein (290aa)
Spermidine/putrescine transport system permease protein PotB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWM9_9RHIZ rbh
Spermidine/putrescine transport system permease protein PotB {ECO:0000313|EMBL:EYR81288.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
spermidine/putrescine transport system, permease protein rbh
SCNpilot_cont_750_bf_scaffold_489_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24097..24963
DNA (867bp) protein (289aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5I9_9RHIZ rbh
ABC-type spermidine/putrescine transport system permease component II {ECO:0000313|EMBL:EYR81289.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
spermidine/putrescine transport system, permease protein rbh
SCNpilot_cont_750_bf_scaffold_489_24
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25210..26526)
DNA (1317bp) protein (439aa)
Aminotransferase class-III n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UXY4_9RHIZ rbh
Aminotransferase class-III {ECO:0000313|EMBL:ENN86525.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
aminotransferase class-III rbh
SCNpilot_cont_750_bf_scaffold_489_25
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26523..27344)
DNA (822bp) protein (274aa)
N-formylglutamate amidohydrolase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X7I4_OCHA4 rbh
N-formylglutamate amidohydrolase rbh
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:ABS17188.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_750_bf_scaffold_489_26
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27359..28705)
DNA (1347bp) protein (449aa)
glutamine synthetase catalytic region; K01915 glutamine synthetase [EC:6.3.1.2] rbh
Glutamine synthetase catalytic region n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V669_9RHIZ rbh
Glutamine synthetase catalytic region {ECO:0000313|EMBL:ENN86527.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_cont_750_bf_scaffold_489_27
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28751..29413)
DNA (663bp) protein (221aa)
Isochorismatase hydrolase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U8H9_9RHIZ rbh
Isochorismatase hydrolase {ECO:0000313|EMBL:ENN86528.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
isochorismatase hydrolase rbh
SCNpilot_cont_750_bf_scaffold_489_28
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29459..30340)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U1L9_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:ENN86529.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
RpiR family transcriptional regulator rbh
SCNpilot_cont_750_bf_scaffold_489_29
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30509..32389
DNA (1881bp) protein (627aa)
ABC transporter related protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UXZ2_9RHIZ rbh
ABC transporter related protein {ECO:0000313|EMBL:ENN86530.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
ABC transporter related; K01995 branched-chain amino acid transport system ATP-binding protein; K01998 branched-chain amino acid transport system permease protein rbh
SCNpilot_cont_750_bf_scaffold_489_30
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32411..33565
DNA (1155bp) protein (385aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V0M8_9RHIZ rbh
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:ENN86531.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein rbh
Displaying items 1-30 of 43 in total

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