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SCNpilot_cont_750_bf_scaffold_759

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Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_759_1
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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185..3160
DNA (2976bp) protein (992aa)
Transposase Tn3 family protein n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LFI0_AGRSH rbh
transposase Tn3 family protein rbh
Transposase Tn3 family protein {ECO:0000313|EMBL:ADY67812.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_cont_750_bf_scaffold_759_2
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3100..3771)
DNA (672bp) protein (224aa)
Putative short-chain dehydrogenase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PRZ1_9RHIZ
Putative short-chain dehydrogenase {ECO:0000313|EMBL:CCM79501.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
short-chain dehydrogenase/reductase SDR; K07124
SCNpilot_cont_750_bf_scaffold_759_3
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3886..4869)
DNA (984bp) protein (328aa)
Putative oxidoreductase, Zn-dependent and NAD(P)-binding n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q3P1_9RHIZ rbh
Putative oxidoreductase, Zn-dependent and NAD(P)-binding {ECO:0000313|EMBL:CCM79500.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
zinc-binding alcohol dehydrogenase rbh
SCNpilot_cont_750_bf_scaffold_759_4
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5044..5385
DNA (342bp) protein (114aa)
Uncharacterized HTH-type transcriptional regulator ydeP n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q6A1_9RHIZ
Uncharacterized HTH-type transcriptional regulator ydeP {ECO:0000313|EMBL:CCM79499.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
transcriptional regulator
SCNpilot_cont_750_bf_scaffold_759_5
unknown

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comp(5378..5482)
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_759_6
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5512..6186)
DNA (675bp) protein (225aa)
Transcriptional regulator TetR family n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K5P8_AGRVS rbh
TetR family transcriptional regulator rbh
Transcriptional regulator TetR family {ECO:0000313|EMBL:ACM40196.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_cont_750_bf_scaffold_759_7
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6570..7763
DNA (1194bp) protein (398aa)
ABC transporter nucleotide binding/ATPase protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K5P7_AGRVS rbh
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAJ97090.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
ABC transporter ATPase; K02023 multiple sugar transport system ATP-binding protein rbh
SCNpilot_cont_750_bf_scaffold_759_8
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7747..8667
DNA (921bp) protein (307aa)
ABC transporter n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K5P6_AGRVS rbh
Putative ABC transporter permease protein {ECO:0000313|EMBL:GAJ97089.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
ABC transporter; K02025 multiple sugar transport system permease protein rbh
SCNpilot_cont_750_bf_scaffold_759_9
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8667..9494
DNA (828bp) protein (276aa)
ABC transporter membrane spanning protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K5P5_AGRVS rbh
Putative ABC transporter permease protein {ECO:0000313|EMBL:GAJ97088.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
ABC transporter permease; K02026 multiple sugar transport system permease protein rbh
SCNpilot_cont_750_bf_scaffold_759_10
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9565..10836
DNA (1272bp) protein (424aa)
ABC transporter substrate binding protein (Sugar) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K5P4_AGRVS rbh
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAJ97087.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
ABC transporter substrate binding protein (sugar); K02027 multiple sugar transport system substrate-binding protein rbh
SCNpilot_cont_750_bf_scaffold_759_11
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10961..11791
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K5P3_AGRVS rbh
Uncharacterized protein {ECO:0000313|EMBL:GAJ97086.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
hypothetical protein rbh
SCNpilot_cont_750_bf_scaffold_759_12
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11927..12802
DNA (876bp) protein (292aa)
hypothetical protein; K04486 histidinol-phosphatase (PHP family) [EC:3.1.3.15] rbh
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K5P2_AGRVS rbh
Histidinol-phosphate phosphatase family protein {ECO:0000313|EMBL:GAJ97085.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_cont_750_bf_scaffold_759_13
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12805..13341
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037884F8
Putative acetyltransferase {ECO:0000313|EMBL:GAJ97084.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
acetyltransferase
SCNpilot_cont_750_bf_scaffold_759_14
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14365..15624
DNA (1260bp) protein (420aa)
Reverse transcriptase/maturase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JJR5_AGRRK rbh
reverse transcriptase/maturase rbh
Reverse transcriptase/maturase protein {ECO:0000313|EMBL:ACM30157.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_750_bf_scaffold_759_15
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15657..16151
DNA (495bp) protein (165aa)
Transposase n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D7K7_9RHIZ
Transposase {ECO:0000313|EMBL:EDQ33097.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
transposase; K07498 putative transposase
SCNpilot_cont_750_bf_scaffold_759_16
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16491..17885)
DNA (1395bp) protein (465aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
two component sensor kinase (EC:2.7.3.-) rbh
histidine kinase n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI0003635C30 rbh
SCNpilot_cont_750_bf_scaffold_759_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17882..18544)
DNA (663bp) protein (221aa)
transcriptional regulator n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI0003675A47 rbh
DNA-binding response regulator {ECO:0000313|EMBL:AHK04468.1}; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;"
two component response regulator rbh
SCNpilot_cont_750_bf_scaffold_759_18
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18675..19190
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LDQ4_AGRSH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY65866.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_cont_750_bf_scaffold_759_19
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19547..20680
DNA (1134bp) protein (378aa)
Putative RND efflux transporter, MFP subunit n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LR42_RHITR rbh
Multidrug resistance protein MdtA {ECO:0000313|EMBL:GAK72116.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
putative RND efflux transporter, MFP subunit rbh
SCNpilot_cont_750_bf_scaffold_759_20
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20677..23832
DNA (3156bp) protein (1052aa)
Resistance nodulation cell division (RND) drug efflux pump, inner membrane component n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSS5_RHITR rbh
Multidrug resistance protein MdtB {ECO:0000313|EMBL:GAK72115.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
resistance nodulation cell division (RND) drug efflux pump, inner membrane component rbh
SCNpilot_cont_750_bf_scaffold_759_21
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23889..25145
DNA (1257bp) protein (419aa)
Arsenical pump membrane protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UDB3_9RHIZ rbh
Arsenical pump membrane protein {ECO:0000256|RuleBase:RU004993}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
arsB; arsenical efflux pump protein ArsB
SCNpilot_cont_750_bf_scaffold_759_22
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25474..26676)
DNA (1203bp) protein (401aa)
GGDEF domain-containing protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVV0_RHITR rbh
GGDEF domain-containing protein rbh
GGDEF domain-containing protein {ECO:0000313|EMBL:AGB75367.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_bf_scaffold_759_23
unknown

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comp(27365..27580)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_759_24
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27696..28085)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J6DIN2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJT01549.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
hypothetical protein; K06893
SCNpilot_cont_750_bf_scaffold_759_25
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28108..28752)
DNA (645bp) protein (215aa)
NADP oxidoreductase coenzyme F420-dependent n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5M9W6_9RHIZ
NADP oxidoreductase coenzyme F420-dependent {ECO:0000313|EMBL:EJT01550.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
coenzyme F420-dependent NADP oxidoreductase; K06988
SCNpilot_cont_750_bf_scaffold_759_26
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28784..29536)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0KGZ5_RHILT rbh
Uncharacterized protein {ECO:0000313|EMBL:EJC76474.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
glucose dehydrogenase rbh
SCNpilot_cont_750_bf_scaffold_759_27
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29587..30321)
DNA (735bp) protein (245aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhizobium sp. CCGE 510 RepID=J6DFI8_9RHIZ rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EJT01551.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
glucose dehydrogenase rbh
SCNpilot_cont_750_bf_scaffold_759_28
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30547..31443
DNA (897bp) protein (299aa)
Transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0WGN9_RHILT rbh
Transcriptional regulator {ECO:0000313|EMBL:EJC84598.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
LysR family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_759_29
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31781..33568)
DNA (1788bp) protein (596aa)
methyl-accepting chemotaxis protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000368A12A rbh
PAS domain S-box {ECO:0000313|EMBL:EJC63931.1}; Flags: Precursor;; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
mcpA; putative methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein rbh
SCNpilot_cont_750_bf_scaffold_759_30
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34277..35254)
DNA (978bp) protein (326aa)
Exonuclease RNase T and DNA polymerase III; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] rbh
Exonuclease RNase T and DNA polymerase III n=1 Tax=Sinorhizobium meliloti (strain BL225C) RepID=F6BXR0_SINMB rbh
Exonuclease RNase T and DNA polymerase III {ECO:0000313|EMBL:AEG06790.1}; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
Displaying items 1-30 of 57 in total

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