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SCNpilot_cont_750_bf_scaffold_339

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_339_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..653
DNA (651bp) protein (217aa)
D-mannonate oxidoreductase {ECO:0000313|EMBL:GAO53418.1}; EC=1.1.1.57 {ECO:0000313|EMBL:GAO53418.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
mannitol dehydrogenase domain-containing protein; K00040 fructuronate reductase [EC:1.1.1.57]
Fructuronate reductase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C596_9SPHN
SCNpilot_cont_750_bf_scaffold_339_2
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(743..1777)
DNA (1035bp) protein (345aa)
Transcriptional regulator, LacI family protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NAJ6_9SPHN rbh
Transcriptional regulator, LacI family protein {ECO:0000313|EMBL:EAT08010.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
LacI-family transcriptional regulator; K02529 LacI family transcriptional regulator rbh
SCNpilot_cont_750_bf_scaffold_339_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1821..2246)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W243_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY81572.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_339_4
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2313..3092)
DNA (780bp) protein (260aa)
cysG1; uroporphyrin-III C-methyltransferase; K02302 uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] rbh
Uroporphyrin-III C-methyltransferase n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z504_SPHJU rbh
Uroporphyrin-III C-methyltransferase {ECO:0000313|EMBL:BAI97686.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
SCNpilot_cont_750_bf_scaffold_339_5
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3089..5671)
DNA (2583bp) protein (861aa)
nitrate reductase catalytic subunit (EC:1.7.99.4); K00372 nitrate reductase catalytic subunit [EC:1.7.99.4] rbh
Putative anaerobic dehydrogenase n=1 Tax=Novosphingobium sp. AP12 RepID=J3AFZ3_9SPHN rbh
Putative anaerobic dehydrogenase {ECO:0000313|EMBL:EJL31311.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
SCNpilot_cont_750_bf_scaffold_339_6
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5668..6021)
DNA (354bp) protein (118aa)
nitrite reductase (NAD(P)H) large subunit, NirD; K00363 nitrite reductase (NAD(P)H) small subunit [EC:1.7.1.4]
Nitrite reductase n=1 Tax=Sphingobium baderi LL03 RepID=T0I962_9SPHN
Nitrite reductase {ECO:0000313|EMBL:EQB06159.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
SCNpilot_cont_750_bf_scaffold_339_7
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6018..8537)
DNA (2520bp) protein (840aa)
assimilatory nitrite reductase (NAD(P)H) large subunit (EC:1.7.1.4); K00362 nitrite reductase (NAD(P)H) large subunit [EC:1.7.1.4] rbh
Assimilatory nitrite reductase (NAD(P)H) large subunit {ECO:0000313|EMBL:ABD27403.1}; EC=1.7.1.4 {ECO:0000313|EMBL:ABD27403.1};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Assimilatory nitrite reductase (NAD(P)H) large subunit n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G420_NOVAD rbh
SCNpilot_cont_750_bf_scaffold_339_8
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8775..10076)
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B57EEF rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD27404.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_750_bf_scaffold_339_9
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10402..11619)
DNA (1218bp) protein (406aa)
Nitrate transporter component, nrtA n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z357_9SPHN rbh
Nitrate transporter component, nrtA {ECO:0000313|EMBL:EGD60956.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
nitrate transporter component, nrtA; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_cont_750_bf_scaffold_339_10
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11616..12197)
DNA (582bp) protein (194aa)
Response regulator receiver (CheY-like) and ANTAR domain protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G415_NOVAD rbh
response regulator receiver/ANTAR domain-containing protein; K07183 response regulator NasT rbh
Response regulator receiver (CheY-like) and ANTAR domain protein {ECO:0000313|EMBL:ABD27408.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_750_bf_scaffold_339_11
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12406..14094)
DNA (1689bp) protein (563aa)
protein phosphatase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248BE60 rbh
Ser/Thr phosphatase rbh
Protein serine/threonine phosphatase {ECO:0000313|EMBL:ABD27406.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_750_bf_scaffold_339_12
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14189..15412
DNA (1224bp) protein (408aa)
Major facilitator transporter n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z355_9SPHN rbh
Major facilitator transporter {ECO:0000313|EMBL:EGD60958.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
major facilitator transporter; K02575 MFS transporter, NNP family, nitrate/nitrite transporter rbh
SCNpilot_cont_750_bf_scaffold_339_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15422..15904)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B7A366
Uncharacterized protein {ECO:0000313|EMBL:GAO53345.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_339_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15908..16588)
DNA (681bp) protein (227aa)
Pentapeptide repeat family protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MLM6_9SPHN
Pentapeptide repeat family protein {ECO:0000313|EMBL:GAO53344.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
pentapeptide repeat-containing protein
SCNpilot_cont_750_bf_scaffold_339_15
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16597..17250)
DNA (654bp) protein (218aa)
Transcriptional regulator, TetR family n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2T8Y0_LEIAQ
HTH-type transcriptional repressor KstR2 {ECO:0000313|EMBL:KJL24603.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
TetR family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_339_16
unknown

Not on your lists

comp(17320..17460)
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_339_17
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17475..18395)
DNA (921bp) protein (307aa)
di-heme cytochrome c peroxidase (EC:1.11.1.5); K00428 cytochrome c peroxidase [EC:1.11.1.5]
Di-heme cytochrome c peroxidase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXU6_9BRAD
Di-heme cytochrome c peroxidase {ECO:0000313|EMBL:EAQ35194.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_750_bf_scaffold_339_18
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18392..18919)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXU5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ35193.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_339_19
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19014..21095
DNA (2082bp) protein (694aa)
TonB-denpendent receptor n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C3E6 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKU73093.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_750_bf_scaffold_339_20
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21089..21628)
DNA (540bp) protein (180aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z7X4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59251.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_339_21
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21650..23740)
DNA (2091bp) protein (697aa)
Quinoprotein glucose dehydrogenase {ECO:0000313|EMBL:EZP74261.1}; EC=1.1.5.2 {ECO:0000313|EMBL:EZP74261.1};; Flags: Precursor;; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0J0R6_9SPHN rbh
glucose dehydrogenase
SCNpilot_cont_750_bf_scaffold_339_22
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24077..24874
DNA (798bp) protein (266aa)
Transposase and inactivated derivatives-like protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IDB9_BEII9 rbh
transposase rbh
Transposase and inactivated derivatives-like protein {ECO:0000313|EMBL:ACB94021.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_750_bf_scaffold_339_23
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25111..26136)
DNA (1026bp) protein (342aa)
Transposase IS110 n=1 Tax=Sphingobium ummariense RL-3 RepID=T0KFJ6_9SPHN rbh
Transposase IS110 {ECO:0000313|EMBL:EQB32158.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
transposase; K07486 transposase rbh
SCNpilot_cont_750_bf_scaffold_339_24
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26352..27380
DNA (1029bp) protein (343aa)
Transposase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z352_9RHIZ rbh
Transposase {ECO:0000313|EMBL:EIM30644.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
transposase of ISMdi12, IS110 family rbh
SCNpilot_cont_750_bf_scaffold_339_25
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27799..28914)
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D958_SPHYA rbh
NADH oxidase {ECO:0000313|EMBL:AJR24514.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
alcohol dehydrogenase GroES domain-containing protein rbh
SCNpilot_cont_750_bf_scaffold_339_26
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29074..30705
DNA (1632bp) protein (544aa)
Oxidoreductase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I2X0_9SPHN rbh
Oxidoreductase {ECO:0000313|EMBL:EQB18728.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
oxidoreductase rbh
SCNpilot_cont_750_bf_scaffold_339_27
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30710..31477)
DNA (768bp) protein (256aa)
Putative oxidoreductase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZA8_9SPHN rbh
Putative oxidoreductase {ECO:0000313|EMBL:EZP84733.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_cont_750_bf_scaffold_339_28
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31584..32777)
DNA (1194bp) protein (398aa)
cytochrome P450 n=1 Tax=Sphingomonas echinoides RepID=UPI00026CBCDE rbh
cytochrome P450 rbh
Cytochrome P450 {ECO:0000313|EMBL:ABD26686.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_750_bf_scaffold_339_29
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32790..33845)
DNA (1056bp) protein (352aa)
aminoglycoside phosphotransferase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CBCDD rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO54202.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
aminoglycoside phosphotransferase rbh
SCNpilot_cont_750_bf_scaffold_339_30
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33835..35019)
DNA (1185bp) protein (395aa)
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:GAO54203.1}; EC=1.3.8.1 {ECO:0000313|EMBL:GAO54203.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
acyl-CoA dehydrogenase (EC:1.3.99.3) rbh
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CBCDC rbh
Displaying items 1-30 of 64 in total

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