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SCNpilot_cont_750_bf_scaffold_347

Search features with annotation key words

Displaying items 1-30 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_347_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..198)
DNA (198bp) protein (66aa)
Bacterial regulatory helix-turn-helix , lysR family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WVA9_9SPHN
Transcriptional regulator lysR family {ECO:0000313|EMBL:GAO53593.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
LysR family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_347_2
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(235..930)
DNA (696bp) protein (232aa)
Spermidine synthase n=1 Tax=Novosphingobium sp. AP12 RepID=J2PGN0_9SPHN
Scaffold1, whole genome shotgun sequence {ECO:0000313|EMBL:KIS34542.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_347_3
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1440..1583
DNA (144bp) protein (48aa)
Cold-shock DNA-binding domain protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZCS3_9SPHN
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:EGD57607.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_750_bf_scaffold_347_4
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1999..2220
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZCS4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD57608.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_750_bf_scaffold_347_5
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2368..3126)
DNA (759bp) protein (253aa)
Transglutaminase domain-containing protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDY3_9SPHN rbh
Transglutaminase domain-containing protein {ECO:0000313|EMBL:EGD57180.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
transglutaminase
SCNpilot_cont_750_bf_scaffold_347_6
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3277..5475)
DNA (2199bp) protein (733aa)
Glycosyl transferase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZCR9_9SPHN rbh
Glycosyl transferase {ECO:0000313|EMBL:EGD57603.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
glycosyl transferase family protein rbh
SCNpilot_cont_750_bf_scaffold_347_7
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5575..5745)
DNA (171bp) protein (57aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZCS0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD57604.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_750_bf_scaffold_347_8
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6459..7649)
DNA (1191bp) protein (397aa)
Putative beta-lactamase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I5J7_AZOC5 rbh
beta-lactamase rbh
Putative beta-lactamase {ECO:0000313|EMBL:BAF88287.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_750_bf_scaffold_347_9
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7832..8326
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I5J4_AZOC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF88286.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_750_bf_scaffold_347_10
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8339..8569
DNA (231bp) protein (77aa)
Helix-turn-helix domain protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TLI5_MESCW
helix-turn-helix domain-containing protein; K07727 putative transcriptional regulator
Helix-turn-helix domain protein {ECO:0000313|EMBL:ADV12736.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_cont_750_bf_scaffold_347_11
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9458..10468
DNA (1011bp) protein (337aa)
Putative uncharacterized protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1XWH2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EGY02412.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
SCNpilot_cont_750_bf_scaffold_347_12
unknown

Not on your lists

11021..12667
DNA (1647bp) protein (549aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI00036DA15B
SCNpilot_cont_750_bf_scaffold_347_13
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12664..13551
DNA (888bp) protein (296aa)
Cysteine protease n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KUH2_SOLCM
cysteine protease
Cysteine protease {ECO:0000313|EMBL:AFD07337.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
SCNpilot_cont_750_bf_scaffold_347_14
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13548..13991)
DNA (444bp) protein (148aa)
Uncharacterized protein {ECO:0000313|EMBL:GAM02827.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_cont_750_bf_scaffold_347_15
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13988..14275)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002D33055
Nuclease SbcCD subunit D {ECO:0000313|EMBL:AJR24383.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
nuclease SbcCD subunit D
SCNpilot_cont_750_bf_scaffold_347_16
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14750..16342)
DNA (1593bp) protein (531aa)
hypothetical protein n=1 Tax=Brachybacterium paraconglomeratum RepID=UPI00026C6A32
Nuclease of the RecB family-like protein {ECO:0000313|EMBL:EFC84027.1}; TaxID=102897 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
SCNpilot_cont_750_bf_scaffold_347_17
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17068..18507
DNA (1440bp) protein (480aa)
deoxyguanosinetriphosphate triphosphohydrolase-like protein; K01129 dGTPase [EC:3.1.5.1] rbh
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence {ECO:0000313|EMBL:ABA77766.2}; EC=3.1.5.1 {ECO:0000313|EMBL:ABA77766.2};; TaxID=272943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM; 158).;"
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=2 Tax=Rhodobacter sphaeroides RepID=Q3J618_RHOS4 rbh
SCNpilot_cont_750_bf_scaffold_347_18
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18507..19292
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) RepID=Q3J617_RHOS4
hypothetical protein
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence {ECO:0000313|EMBL:ABA77767.1}; TaxID=272943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM; 158).;"
SCNpilot_cont_750_bf_scaffold_347_19
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19788..20237
DNA (450bp) protein (150aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4I6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD60596.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_347_20
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20345..21178
DNA (834bp) protein (278aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4I4_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EGD60594.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein rbh
SCNpilot_cont_750_bf_scaffold_347_21
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21246..21605)
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI00037302FE
Uncharacterized protein {ECO:0000313|EMBL:EGD60593.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_347_22
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22158..24209
DNA (2052bp) protein (684aa)
Conjugal transfer coupling protein TraG n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5H9_9SPHN rbh
Conjugal transfer coupling protein TraG {ECO:0000313|EMBL:ENY82802.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TraG; K03205 type IV secretion system protein VirD4
SCNpilot_cont_750_bf_scaffold_347_23
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24212..24628
DNA (417bp) protein (139aa)
CopG family transcriptional regulator n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000361792D
Scaffold3, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32925.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
Helix-turn-helix protein, CopG
SCNpilot_cont_750_bf_scaffold_347_24
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24625..25614
DNA (990bp) protein (330aa)
conjugal transfer protein TrbB n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AEC6 rbh
Conjugal transfer protein TrbB {ECO:0000313|EMBL:ENY82800.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TrbB; K03196 type IV secretion system protein VirB11 rbh
SCNpilot_cont_750_bf_scaffold_347_25
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25617..25952
DNA (336bp) protein (112aa)
conjugal transfer protein TrbC n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000366C078
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_cont_750_bf_scaffold_347_26
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25949..26236
DNA (288bp) protein (96aa)
Conjugal transfer protein TrbD n=1 Tax=Sphingobium indicum B90A RepID=I5BBU5_9SPHN
Conjugal transfer protein TrbD {ECO:0000313|EMBL:EIM67047.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3
SCNpilot_cont_750_bf_scaffold_347_27
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26230..28686
DNA (2457bp) protein (819aa)
Conjugal transfer ATPase TrbE n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5H6_9SPHN rbh
Conjugal transfer protein TrbE {ECO:0000313|EMBL:AHE55609.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
conjugal transfer protein TrbE; K03199 type IV secretion system protein VirB4 rbh
SCNpilot_cont_750_bf_scaffold_347_28
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28686..29429
DNA (744bp) protein (248aa)
Conjugal transfer protein TrbJ n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJA6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE55610.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
conjugal transfer protein TrbJ
SCNpilot_cont_750_bf_scaffold_347_29
Sphingomonas sp. BHC-A, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29543..30844
DNA (1302bp) protein (434aa)
Conjugal transfer protein TrbL n=1 Tax=Sphingobium indicum B90A RepID=I5BBU8_9SPHN rbh
Conjugal transfer protein TrbL {ECO:0000313|EMBL:KEZ00177.1}; TaxID=322611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. BHC-A.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL rbh
SCNpilot_cont_750_bf_scaffold_347_30
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30844..32586
DNA (1743bp) protein (581aa)
conjugal transfer protein TrbG n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AEBF
P-type conjugative transfer protein TrbG {ECO:0000313|EMBL:KEQ53255.1}; Flags: Precursor;; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
conjugal transfer protein TrbG; K03204 type IV secretion system protein VirB9
Displaying items 1-30 of 93 in total

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