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SCNpilot_cont_750_bf_scaffold_51

Search features with annotation key words

Displaying items 1-30 of 258 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_51_1
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

187..540
DNA (354bp) protein (118aa)
Transcriptional regulator, GntR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8Q4_PELHB
GntR family transcriptional regulator {ECO:0000313|EMBL:KKB06936.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
GntR family transcriptional regulator; K07979 GntR family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_51_2
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

537..1403
DNA (867bp) protein (289aa)
ABC transporter ATP-binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8Q3_PELHB rbh
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB77858.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
ABC transporter ATP-binding protein; K01990 ABC-2 type transport system ATP-binding protein rbh
SCNpilot_cont_750_bf_scaffold_51_3
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1403..2293
DNA (891bp) protein (297aa)
ABC transporter, permease protein, putative n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8Q2_PELHB
ABC transporter, permease protein, putative {ECO:0000313|EMBL:CDP52539.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
ABC transporter permease; K01992 ABC-2 type transport system permease protein
SCNpilot_cont_750_bf_scaffold_51_4
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2441..3364
DNA (924bp) protein (308aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCW7_PELHB rbh
Glyoxalase family protein {ECO:0000313|EMBL:CDP51438.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
glyoxalase/bleomycin resistance protein/dioxygenase; K07104 rbh
SCNpilot_cont_750_bf_scaffold_51_5
unknown

Not on your lists

comp(3397..3621)
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_51_6
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3777..4319
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WCU2_ACISJ
Membrane protein {ECO:0000313|EMBL:KKB77747.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_51_7
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4494..5402)
DNA (909bp) protein (303aa)
2-dehydro-3-deoxygluconate kinase {ECO:0000313|EMBL:CDP51425.1}; EC=2.7.1.45 {ECO:0000313|EMBL:CDP51425.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
2-dehydro-3-deoxygluconokinase; K00874 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] rbh
2-dehydro-3-deoxygluconate kinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8Q9_PELHB rbh
SCNpilot_cont_750_bf_scaffold_51_8
Thioclava pacifica, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5468..6994)
DNA (1527bp) protein (509aa)
5'-Nucleotidase domain protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8RYD2_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:KEO56402.1}; TaxID=1353537 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava pacifica DSM 10166.;"
5'-nucleotidase
SCNpilot_cont_750_bf_scaffold_51_9
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7206..8066)
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003732192
UDP-galactose-lipid carrier transferase {ECO:0000313|EMBL:CDP51411.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_51_10
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8164..9198
DNA (1035bp) protein (345aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
phosphate regulon sensor protein PhoR (SphS); K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] rbh
Phosphate regulon sensor protein PhoR (SphS) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8R1_PELHB rbh
SCNpilot_cont_750_bf_scaffold_51_11
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9397..10443
DNA (1047bp) protein (349aa)
UPI0003CF18A1 related cluster n=1 Tax=unknown RepID=UPI0003CF18A1
phosphate ABC transporter substrate-binding protein; K02040 phosphate transport system substrate-binding protein
Phosphate-binding protein PstS {ECO:0000256|PIRNR:PIRNR002756}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
SCNpilot_cont_750_bf_scaffold_51_12
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10508..11485
DNA (978bp) protein (326aa)
Phosphate ABC transporter permease protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JXR4_AGRVS rbh
Phosphate transporter permease subunit PstC {ECO:0000313|EMBL:KDB05519.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
pstC; phosphate ABC transporter permease; K02037 phosphate transport system permease protein rbh
SCNpilot_cont_750_bf_scaffold_51_13
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11497..12336
DNA (840bp) protein (280aa)
Phosphate ABC transporter permease protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JXR3_AGRVS
Phosphate ABC transporter permease {ECO:0000313|EMBL:KJR62418.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
pstA; phosphate ABC transporter permease; K02038 phosphate transport system permease protein
SCNpilot_cont_750_bf_scaffold_51_14
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12345..13190
DNA (846bp) protein (282aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
pstB; phosphate ABC transporter ATP-binding protein; K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27] rbh
Phosphate ABC transporter ATP-binding protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JXR2_AGRVS rbh
SCNpilot_cont_750_bf_scaffold_51_15
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13202..13915
DNA (714bp) protein (238aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8R6_PELHB
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
phosphate transport system regulatory protein PhoU; K02039 phosphate transport system protein
SCNpilot_cont_750_bf_scaffold_51_16
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13927..14628
DNA (702bp) protein (234aa)
Phosphate regulon transcriptional regulatory protein PhoB (SphR) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8R7_PELHB rbh
Chemotaxis protein CheY {ECO:0000313|EMBL:KKB13079.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
phosphate regulon transcriptional regulatory protein PhoB (SphR); K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB rbh
SCNpilot_cont_750_bf_scaffold_51_17
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14630..15238)
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00037B5C96
Uncharacterized protein {ECO:0000313|EMBL:KKC33165.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_51_18
unknown

Not on your lists

comp(15243..15461)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_51_19
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15482..16042)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8S8_PELHB
GcrA cell cycle regulator {ECO:0000313|EMBL:KKB77885.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein; K13583 GcrA cell cycle regulator
SCNpilot_cont_750_bf_scaffold_51_20
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16409..17614
DNA (1206bp) protein (402aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
acetylornithine aminotransferase; K00821 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] rbh
Acetylornithine aminotransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8S9_PELHB rbh
SCNpilot_cont_750_bf_scaffold_51_21
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17628..18554
DNA (927bp) protein (309aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Ornithine carbamoyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8T0_PELHB rbh
ornithine carbamoyltransferase rbh
SCNpilot_cont_750_bf_scaffold_51_22
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18556..19560
DNA (1005bp) protein (335aa)
Chaperone protein Hsp33 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8T1_PELHB rbh
33 kDa chaperonin {ECO:0000256|SAAS:SAAS00038673}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
chaperone protein Hsp33; K04083 molecular chaperone Hsp33 rbh
SCNpilot_cont_750_bf_scaffold_51_23
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19734..21077
DNA (1344bp) protein (448aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00037663C4
Probable Co/Zn/Cd efflux system membrane fusion pr otein {ECO:0000313|EMBL:CDP50320.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
RND family efflux transporter MFP subunit
SCNpilot_cont_750_bf_scaffold_51_24
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21088..24216
DNA (3129bp) protein (1043aa)
Cation/multidrug efflux pump n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KJ03_MESAW
RND multidrug efflux transporter Acriflavin resis tance protein {ECO:0000313|EMBL:CDP50321.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
cation/multidrug efflux pump
SCNpilot_cont_750_bf_scaffold_51_25
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24224..25432)
DNA (1209bp) protein (403aa)
O-acetylhomoserine sulfhydrylase / O-succinylhomoserine sulfhydrylase; K10764 O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] rbh
O-acetylhomoserine sulfhydrylase / O-succinylhomoserine sulfhydrylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8T5_PELHB rbh
O-succinylhomoserine sulfhydrylase {ECO:0000313|EMBL:KKB85070.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_cont_750_bf_scaffold_51_26
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25717..26814
DNA (1098bp) protein (366aa)
Deoxycytidine triphosphate deaminase {ECO:0000313|EMBL:CDP51192.1}; EC=3.5.4.13 {ECO:0000313|EMBL:CDP51192.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
deoxycytidine triphosphate deaminase; K01494 dCTP deaminase [EC:3.5.4.13]
Deoxycytidine triphosphate deaminase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8T6_PELHB
SCNpilot_cont_750_bf_scaffold_51_27
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26884..27636)
DNA (753bp) protein (251aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000374BD37
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KKB81515.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
SCNpilot_cont_750_bf_scaffold_51_28
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27707..28714)
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037C5A61 rbh
Uncharacterized protein {ECO:0000313|EMBL:KGM32364.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
Autoinducer 2-binding protein lsrB
SCNpilot_cont_750_bf_scaffold_51_29
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28760..29761)
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000380959B rbh
Uncharacterized protein {ECO:0000313|EMBL:KGM32370.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
sugar ABC transporter permease; K10561 rhamnose transport system permease protein
SCNpilot_cont_750_bf_scaffold_51_30
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29764..30756)
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000369D7BF rbh
Ribose ABC transporter permease {ECO:0000313|EMBL:KGM32369.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
rbsC1; ribose transport system permease protein RbsC
Displaying items 1-30 of 258 in total

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