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SCNpilot_cont_750_bf_scaffold_89

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Displaying items 1-30 of 434 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_89_1
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(291..671)
DNA (381bp) protein (127aa)
Chemotaxis regulator-transmits chemoreceptor signals to flagelllar motor components CheY n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R942_PELHB
Chemotaxis regulator {ECO:0000313|EMBL:CDP53066.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY; K03413 two-component system, chemotaxis family, response regulator CheY
SCNpilot_cont_750_bf_scaffold_89_2
unknown

Not on your lists

comp(794..1144)
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_89_3
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1166..1864)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R941_PELHB
Histidine phosphotransferase {ECO:0000313|EMBL:KFL29840.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein; K13588 histidine phosphotransferase ChpT
SCNpilot_cont_750_bf_scaffold_89_4
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1885..2460)
DNA (576bp) protein (192aa)
YHS domain-containing protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R940_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB79698.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_89_5
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2564..3124
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P5P6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KFL29839.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_89_6
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3162..3560)
DNA (399bp) protein (133aa)
Glutathione-dependent formaldehyde-activating enzyme family protein n=1 Tax=Asticcacaulis biprosthecum C19 RepID=F4QQZ1_9CAUL
Glutathione-dependent formaldehyde-activating GFA {ECO:0000313|EMBL:KFC61758.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
glutathione-dependent formaldehyde-activating gfa
SCNpilot_cont_750_bf_scaffold_89_7
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3783..4961
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R938_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB86417.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_89_8
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4972..5196)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R949_PELHB
Uncharacterized protein {ECO:0000313|EMBL:CDP53061.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_89_9
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5321..6343
DNA (1023bp) protein (341aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
ribosomal large subunit pseudouridine synthase D; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] rbh
Pseudouridine synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R950_PELHB rbh
SCNpilot_cont_750_bf_scaffold_89_10
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6413..6715
DNA (303bp) protein (101aa)
PRC-barrel domain protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y0V8_MESOW
PRC-barrel domain-containing protein
PRC-barrel domain protein {ECO:0000313|EMBL:AEH87089.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_cont_750_bf_scaffold_89_11
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6914..7804
DNA (891bp) protein (297aa)
RNA polymerase sigma factor RpoH n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R951_PELHB rbh
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
RNA polymerase sigma factor RpoH; K03089 RNA polymerase sigma-32 factor rbh
SCNpilot_cont_750_bf_scaffold_89_12
unknown

Not on your lists

comp(7876..8274)
DNA (399bp) protein (133aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_89_13
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8390..9088)
DNA (699bp) protein (233aa)
thiamin pyrophosphokinase; K00949 thiamine pyrophosphokinase [EC:2.7.6.2]
Thiamin pyrophosphokinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R953_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB12652.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_cont_750_bf_scaffold_89_14
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9200..10273
DNA (1074bp) protein (358aa)
Thiamin ABC transporter, substrate-binding component n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R954_PELHB rbh
Thiamin ABC transporter, substrate-binding compone nt {ECO:0000313|EMBL:CDP53055.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
thiamin ABC transporter, substrate-binding component; K02064 thiamine transport system substrate-binding protein rbh
SCNpilot_cont_750_bf_scaffold_89_15
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10257..11834
DNA (1578bp) protein (526aa)
Thiamin ABC transporter, transmembrane component n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R955_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KFL28913.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
thiamin ABC transporter, transmembrane component; K02063 thiamine transport system permease protein rbh
SCNpilot_cont_750_bf_scaffold_89_16
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11821..12444
DNA (624bp) protein (208aa)
Thiamin ABC transporter, ATPase component / thiamine transport ATP-binding protein thiQ n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R956_PELHB
Thiamin ABC transporter, ATPase component {ECO:0000313|EMBL:CDP53053.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
thiamin ABC transporter ATPase component / thiamine transport ATP-binding protein thiQ; K02062 thiamine transport system ATP-binding protein
SCNpilot_cont_750_bf_scaffold_89_17
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12457..14532)
DNA (2076bp) protein (692aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R957_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB86410.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein rbh
SCNpilot_cont_750_bf_scaffold_89_18
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14577..15866)
DNA (1290bp) protein (430aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
adenylosuccinate synthetase (EC:6.3.4.4); K01939 adenylosuccinate synthase [EC:6.3.4.4]
PREDICTED: adenylosuccinate synthetase 1, chloroplastic-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C12FB2 rbh
SCNpilot_cont_750_bf_scaffold_89_19
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15959..16894
DNA (936bp) protein (312aa)
Permease of the drug/metabolite transporter (DMT) superfamily n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R959_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB12651.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
permease of the drug/metabolite transporter (DMT) superfamily rbh
SCNpilot_cont_750_bf_scaffold_89_20
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16928..17500)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KP09_MESAW
Isoprenylcysteine carboxyl methyltransferase {ECO:0000313|EMBL:CDX19184.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
putative protein-S-isoprenylcysteine methyltransferase
SCNpilot_cont_750_bf_scaffold_89_21
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17568..17783)
DNA (216bp) protein (72aa)
UPI0003CE314B related cluster n=1 Tax=unknown RepID=UPI0003CE314B
Uncharacterized protein {ECO:0000313|EMBL:CDN53133.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_89_22
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17780..18022)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F3E1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV11842.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
SCNpilot_cont_750_bf_scaffold_89_23
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18024..19610)
DNA (1587bp) protein (529aa)
D-3-phosphoglycerate dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] rbh
D-3-phosphoglycerate dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R960_PELHB rbh
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:KFC62398.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_cont_750_bf_scaffold_89_24
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19713..20894)
DNA (1182bp) protein (394aa)
Phosphoserine transaminase {ECO:0000256|SAAS:SAAS00182444}; EC=2.6.1.52 {ECO:0000256|SAAS:SAAS00182444};; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
phosphoserine aminotransferase; K00831 phosphoserine aminotransferase [EC:2.6.1.52] rbh
Phosphoserine aminotransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R962_PELHB rbh
SCNpilot_cont_750_bf_scaffold_89_25
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21034..21483
DNA (450bp) protein (150aa)
SEC-independent protein translocase protein TatC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTM3_9RHIZ
Hemoglobin-like protein {ECO:0000313|EMBL:KFC71264.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SEC-independent protein translocase protein TatC; K06886 hemoglobin
SCNpilot_cont_750_bf_scaffold_89_26
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21493..22953)
DNA (1461bp) protein (487aa)
UPI0003CF95A3 related cluster n=1 Tax=unknown RepID=UPI0003CF95A3
MFS transporter {ECO:0000313|EMBL:ESY73391.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
major facilitator superfamily protein
SCNpilot_cont_750_bf_scaffold_89_27
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23140..24390)
DNA (1251bp) protein (417aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI0003752A29 rbh
Patatin {ECO:0000313|EMBL:EXI65858.1}; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
patatin
SCNpilot_cont_750_bf_scaffold_89_28
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24502..26565
DNA (2064bp) protein (688aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
uvrD1; DNA helicase (EC:3.6.1.-); K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
DNA/RNA helicase, superfamily I n=1 Tax=Microvirga sp. WSM3557 RepID=I4YQL0_9RHIZ
SCNpilot_cont_750_bf_scaffold_89_29
unknown

Not on your lists

comp(26567..26821)
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_89_30
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26929..28065
DNA (1137bp) protein (379aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YFE0_9BRAD
Putative uncharacterized protein {ECO:0000313|EMBL:EHR01531.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
hypothetical protein; K09927 hypothetical protein
Displaying items 1-30 of 434 in total

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