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SCNpilot_cont_750_bf_scaffold_1070

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_1070_1
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..750)
DNA (750bp) protein (250aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IP22_9BRAD
SCNpilot_cont_750_bf_scaffold_1070_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(957..1316)
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=RL20_NITHX
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
50S ribosomal protein L20 {ECO:0000255|HAMAP-Rule:MF_00382}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_1070_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1388..1570)
DNA (183bp) protein (61aa)
50S ribosomal protein L35 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=RL35_NITHX
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
50S ribosomal protein L35 {ECO:0000255|HAMAP-Rule:MF_00514}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_1070_4
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1866..2504)
DNA (639bp) protein (213aa)
Translation initiation factor IF-3 n=3 Tax=Bradyrhizobium RepID=A4YJM6_BRASO rbh
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 rbh
SCNpilot_cont_750_bf_scaffold_1070_5
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2590..3378
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QS18_NITHX rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE60979.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_1070_6
unknown

Not on your lists

comp(3437..4702)
DNA (1266bp) protein (422aa)
PREDICTED: protein TsetseEP-like n=1 Tax=Macaca fascicularis RepID=UPI0003AB71A0
SCNpilot_cont_750_bf_scaffold_1070_7
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4910..5380
DNA (471bp) protein (157aa)
polyketide cyclase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002DC8902
Bradyrhizobium elkanii strain UASWS1015 Contig168, whole genome shotgun sequence {ECO:0000313|EMBL:KIU50844.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1070_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5590..6732)
DNA (1143bp) protein (381aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Epoxyqueuosine reductase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P8F7_9BRAD rbh
iron-sulfur cluster binding protein rbh
SCNpilot_cont_750_bf_scaffold_1070_9
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6968..7660)
DNA (693bp) protein (231aa)
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
glutathione S-transferase n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003793EDB rbh
Glutathione S-transferase {ECO:0000313|EMBL:EJZ35841.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
SCNpilot_cont_750_bf_scaffold_1070_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7860..8666
DNA (807bp) protein (269aa)
undecaprenyl pyrophosphate phosphatase; K06153 undecaprenyl-diphosphatase [EC:3.6.1.27]
Undecaprenyl-diphosphatase {ECO:0000255|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000255|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000255|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000255|HAMAP-Rule:MF_01006}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
Undecaprenyl-diphosphatase n=2 Tax=Rhodopseudomonas palustris RepID=UPPP_RHOPA
SCNpilot_cont_750_bf_scaffold_1070_11
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8801..9814)
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z0J2_9BRAD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAM86162.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_cont_750_bf_scaffold_1070_12
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10270..11622
DNA (1353bp) protein (451aa)
Prolidase {ECO:0000313|EMBL:EGP08491.1}; EC=3.4.13.9 {ECO:0000313|EMBL:EGP08491.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Prolidase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QKX2_9BRAD
amidohydrolase
SCNpilot_cont_750_bf_scaffold_1070_13
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11808..12563)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1S9_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EFI53659.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1070_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12823..13437
DNA (615bp) protein (205aa)
3'-5' exonuclease; K03684 ribonuclease D [EC:3.1.13.5]
3'-5' exonuclease n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21C92_RHOPB
3'-5' exonuclease {ECO:0000313|EMBL:KIZ47757.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_750_bf_scaffold_1070_15
unknown

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13434..13589
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1070_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13621..14373
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21C93_RHOPB rbh
hypothetical protein; K11719 lipopolysaccharide export system protein LptC rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD85993.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_750_bf_scaffold_1070_17
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14382..15062
DNA (681bp) protein (227aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5Y6X4_9BRAD
Organic solvent tolerance protein OstA {ECO:0000313|EMBL:KJC61989.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
OstA-like protein; K09774 lipopolysaccharide export system protein LptA
SCNpilot_cont_750_bf_scaffold_1070_18
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15318..16253
DNA (936bp) protein (312aa)
ABC transporter; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
ABC transporter related protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRS0_NITHX
ABC transporter related protein {ECO:0000313|EMBL:ABE61077.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_1070_19
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16352..16720
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRS2_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61075.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_1070_20
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16861..18456
DNA (1596bp) protein (532aa)
RNA polymerase sigma-54 factor n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H3Y3_9BRAD rbh
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
RNA polymerase factor sigma-54; K03092 RNA polymerase sigma-54 factor rbh
SCNpilot_cont_750_bf_scaffold_1070_21
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18729..19331
DNA (603bp) protein (201aa)
Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WSH3_9BRAD rbh
Sigma 54 modulation protein/ribosomal protein S30EA {ECO:0000313|EMBL:EAQ37032.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
sigma-54 modulation protein rbh
SCNpilot_cont_750_bf_scaffold_1070_22
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19739..20200
DNA (462bp) protein (154aa)
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69]
Putative PTS IIA-like nitrogen-regulatory protein PtsN n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1T7_9BRAD
Nitrogen regulatory protein {ECO:0000313|EMBL:CEG09957.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_cont_750_bf_scaffold_1070_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20245..21678)
DNA (1434bp) protein (478aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07HB6_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ08668.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_750_bf_scaffold_1070_24
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21719..23560)
DNA (1842bp) protein (614aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
dihydroxy-acid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9] rbh
Dihydroxy-acid dehydratase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NRI9_AFIFE
SCNpilot_cont_750_bf_scaffold_1070_25
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24011..24271)
DNA (261bp) protein (87aa)
3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HJ82_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig168, whole genome shotgun sequence {ECO:0000313|EMBL:KIU50861.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1070_26
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24322..24747)
DNA (426bp) protein (142aa)
Heat shock protein Hsp20 n=2 Tax=Nitrobacter RepID=Q3SW62_NITWN
heat shock protein Hsp20
Heat shock protein Hsp20 {ECO:0000313|EMBL:ABA03479.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_750_bf_scaffold_1070_27
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24902..25741)
DNA (840bp) protein (280aa)
sn-glycerol-3-phosphate import ATP-binding protein UgpC {ECO:0000256|HAMAP-Rule:MF_01727}; EC=3.6.3.20 {ECO:0000256|HAMAP-Rule:MF_01727};; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ugpC; glycerol-3-phosphate transporter ATP-binding subunit; K05816 sn-glycerol 3-phosphate transport system ATP-binding protein [EC:3.6.3.20]
sugar ABC transporter ATPase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000381FB66
SCNpilot_cont_750_bf_scaffold_1070_28
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25952..26800)
DNA (849bp) protein (283aa)
Putative sugar ABC transporter (Permease protein) glycerol 3-phosphate transport protein, ugpE-like protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TSL4_9BRAD rbh
Glycerol-3-phosphate ABC transporter membrane spanning protein {ECO:0000313|EMBL:EJZ35826.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
glycerol-3-phosphate ABC transporter membrane spanning protein; K05815 sn-glycerol 3-phosphate transport system permease protein rbh
SCNpilot_cont_750_bf_scaffold_1070_29
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26800..27681)
DNA (882bp) protein (294aa)
glycerol-3-phosphate transporter permease n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036722BF rbh
binding-protein-dependent transport systems inner membrane component; K05814 sn-glycerol 3-phosphate transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABE37425.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_750_bf_scaffold_1070_30
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27803..29050)
DNA (1248bp) protein (416aa)
ABC transporter glycerol-3-phosphate-binding protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89WF7_BRADU
Glycerol-3-phosphate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJC42024.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
ABC transporter glycerol-3-phosphate-binding protein; K05813 sn-glycerol 3-phosphate transport system substrate-binding protein
Displaying items 1-30 of 35 in total

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