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SCNpilot_cont_750_bf_scaffold_916

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_916_1
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1081)
DNA (1080bp) protein (360aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1]
S-adenosyl-L-homocysteine hydrolase n=1 Tax=Afipia birgiae RepID=UPI0002D875C8
SCNpilot_cont_750_bf_scaffold_916_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1271..2065)
DNA (795bp) protein (265aa)
S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}; EC=2.5.1.6 {ECO:0000256|RuleBase:RU000541};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
S-adenosylmethionine synthetase; K00789 S-adenosylmethionine synthetase [EC:2.5.1.6]
S-adenosylmethionine synthase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PA02_9BRAD
SCNpilot_cont_750_bf_scaffold_916_3
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2448..3803)
DNA (1356bp) protein (452aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20YV6_RHOPB rbh
Uncharacterized protein {ECO:0000313|EMBL:KJC50665.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein rbh
SCNpilot_cont_750_bf_scaffold_916_4
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3985..4506)
DNA (522bp) protein (174aa)
MarR family transcriptional regulator n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI000370ADAC
Putative transcriptional regulatory protein {ECO:0000313|EMBL:KGJ65468.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
transcriptional regulatory protein MarR family
SCNpilot_cont_750_bf_scaffold_916_5
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4719..5594)
DNA (876bp) protein (292aa)
RNA polymerase sigma 70 n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003710FF7 rbh
RNA polymerase sigma 70 {ECO:0000313|EMBL:KJC47145.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily rbh
SCNpilot_cont_750_bf_scaffold_916_6
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5745..6206
DNA (462bp) protein (154aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
UPI0003CF3282 related cluster n=1 Tax=unknown RepID=UPI0003CF3282
alkylhydroperoxidase like protein
SCNpilot_cont_750_bf_scaffold_916_7
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6327..7442)
DNA (1116bp) protein (372aa)
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (EC:2.1.1.14); K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] rbh
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T9J3_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:CCE03120.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
SCNpilot_cont_750_bf_scaffold_916_8
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7498..9165)
DNA (1668bp) protein (556aa)
Type I phosphodiesterase/nucleotide pyrophosphatase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SZL7_CAUSK rbh
type I phosphodiesterase/nucleotide pyrophosphatase rbh
Type I phosphodiesterase/nucleotide pyrophosphatase {ECO:0000313|EMBL:ABZ70507.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_750_bf_scaffold_916_9
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9292..10005)
DNA (714bp) protein (238aa)
ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DPR2_BRAJP
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EJZ31421.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_750_bf_scaffold_916_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9998..10750)
DNA (753bp) protein (251aa)
ABC transporter related n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07IU8_RHOP5
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter related {ECO:0000313|EMBL:ABJ08136.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_750_bf_scaffold_916_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10747..11775)
DNA (1029bp) protein (343aa)
Inner-membrane translocator n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07IU7_RHOP5 rbh
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein rbh
Inner-membrane translocator {ECO:0000313|EMBL:ABJ08137.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_750_bf_scaffold_916_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11783..12742)
DNA (960bp) protein (320aa)
Inner-membrane translocator n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07IU6_RHOP5 rbh
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein rbh
Inner-membrane translocator {ECO:0000313|EMBL:ABJ08138.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_750_bf_scaffold_916_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12804..13985)
DNA (1182bp) protein (394aa)
Extracellular ligand-binding receptor n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07IU4_RHOP5
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ABJ08140.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_750_bf_scaffold_916_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14431..15018
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QJU9_RHOPT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACF03055.1}; Flags: Precursor;; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_cont_750_bf_scaffold_916_15
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15029..15829)
DNA (801bp) protein (267aa)
Formyltetrahydrofolate deformylase {ECO:0000256|HAMAP-Rule:MF_01927}; EC=3.5.1.10 {ECO:0000256|HAMAP-Rule:MF_01927};; Formyl-FH(4) hydrolase {ECO:0000256|HAMAP-Rule:MF_01927}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
formyltetrahydrofolate deformylase; K01433 formyltetrahydrofolate deformylase [EC:3.5.1.10]
formyltetrahydrofolate deformylase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000364AD0B
SCNpilot_cont_750_bf_scaffold_916_16
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16042..16890
DNA (849bp) protein (283aa)
Putative uroporphyrinogen-III synthase {ECO:0000313|EMBL:CCE00783.1}; EC=4.2.1.75 {ECO:0000313|EMBL:CCE00783.1};; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
uroporphyrinogen-III synthase (EC:4.2.1.75); K01719 uroporphyrinogen-III synthase [EC:4.2.1.75] rbh
Putative uroporphyrinogen-III synthase n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T2V6_9BRAD rbh
SCNpilot_cont_750_bf_scaffold_916_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16978..19416
DNA (2439bp) protein (813aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13AS1_RHOPS rbh
L-carnitine dehydratase/bile acid-inducible protein F rbh
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ABE38818.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_750_bf_scaffold_916_18
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19540..20214)
DNA (675bp) protein (225aa)
Transcriptional regulator, Crp/Fnr family n=2 Tax=Bradyrhizobiaceae RepID=F7QQY3_9BRAD rbh
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:EGP06350.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
transcriptional regulator rbh
SCNpilot_cont_750_bf_scaffold_916_19
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20639..21211
DNA (573bp) protein (191aa)
Branched-chain amino acid transport system ATP-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IRX5_9BRAD
Branched-chain amino acid transport system ATP-binding protein {ECO:0000313|EMBL:ERF85549.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein
Displaying 19 items

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