ggKbase home page

SCNpilot_cont_750_bf_scaffold_310

Search features with annotation key words

Displaying items 1-30 of 76 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_310_1
Rhodococcus sp. EsD8, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

86..1675
DNA (1590bp) protein (530aa)
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:CCW13698.1}; EC=6.2.1.3 {ECO:0000313|EMBL:CCW13698.1};; TaxID=1301088 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. EsD8.;"
long-chain fatty acid--CoA ligase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFDDF2 rbh
long chain fatty acid-CoA ligase rbh
SCNpilot_cont_750_bf_scaffold_310_2
Rhodococcus ruber, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1685..2296
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Sporichthya polymorpha RepID=UPI0003737254
Regulatory protein TetR {ECO:0000313|EMBL:CDZ87229.1}; TaxID=1830 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus ruber.;"
Transcriptional regulator
SCNpilot_cont_750_bf_scaffold_310_3
marine actinobacterium MedAcidi-G3, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2293..3330
DNA (1038bp) protein (346aa)
hypothetical protein n=1 Tax=Sporichthya polymorpha RepID=UPI00037A11DC rbh
Uncharacterized protein {ECO:0000313|EMBL:KIE53022.1}; TaxID=1550402 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G3.;"
hypothetical protein rbh
SCNpilot_cont_750_bf_scaffold_310_4
Streptomyces albus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3311..4831)
DNA (1521bp) protein (507aa)
acyl-CoA synthetase (EC:2.3.1.86); K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] rbh
acyl-CoA synthetase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFDDF6 rbh
Acyl-CoA synthetase {ECO:0000313|EMBL:AJE80430.1}; TaxID=1888 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces albus.;"
SCNpilot_cont_750_bf_scaffold_310_5
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4832..5020)
DNA (189bp) protein (63aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:ETK37050.1}; EC=2.3.1.9 {ECO:0000313|EMBL:ETK37050.1};; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
acetyl-CoA C-acyltransferase (EC:2.3.1.16); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
acetyl-CoA acetyltransferase n=1 Tax=Actinomadura atramentaria RepID=UPI0003809BBD
SCNpilot_cont_750_bf_scaffold_310_6
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

5079..5864
DNA (786bp) protein (262aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:EHN10634.1}; EC=4.2.1.17 {ECO:0000313|EMBL:EHN10634.1};; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
enoyl-CoA hydratase/isomerase; K15866 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
enoyl-CoA hydratase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFDDF9 rbh
SCNpilot_cont_750_bf_scaffold_310_7
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5901..6554
DNA (654bp) protein (218aa)
GntR family transcriptional regulator n=1 Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI00026268BD rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:AIJ24582.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
transcriptional regulator, GntR family rbh
SCNpilot_cont_750_bf_scaffold_310_8
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6728..9178)
DNA (2451bp) protein (817aa)
sarcosine dehydrogenase n=1 Tax=Amycolatopsis methanolica RepID=UPI00036309A8 rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:AIJ24578.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
FAD dependent oxidoreductase rbh
SCNpilot_cont_750_bf_scaffold_310_9
Modestobacter sp. KNN45-2b, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9175..9768)
DNA (594bp) protein (198aa)
soxG; sarcosine oxidase subunit gamma (EC:1.5.3.1)
Sarcosine oxidase gamma subunit n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4EY52_MODMB
Sarcosine oxidase subunit gamma {ECO:0000313|EMBL:KGH44989.1}; TaxID=1522368 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter sp. KNN45-2b.;"
SCNpilot_cont_750_bf_scaffold_310_10
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9761..12508)
DNA (2748bp) protein (916aa)
glycine cleavage system T protein (aminomethyltransferase); K00302 sarcosine oxidase, subunit alpha [EC:1.5.3.1] rbh
ferredoxin n=1 Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI00026268C3 rbh
Glycine cleavage system T protein (Aminomethyltransferase) {ECO:0000313|EMBL:AIJ24576.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
SCNpilot_cont_750_bf_scaffold_310_11
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12505..12747)
DNA (243bp) protein (81aa)
soxD; sarcosine oxidase subunit delta (EC:1.5.3.1)
Sarcosine oxidase delta subunit {ECO:0000313|EMBL:CCH88317.1}; EC=1.5.3.1 {ECO:0000313|EMBL:CCH88317.1};; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
Sarcosine oxidase delta subunit n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4EY54_MODMB
SCNpilot_cont_750_bf_scaffold_310_12
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12758..13987)
DNA (1230bp) protein (410aa)
soxB; sarcosine oxidase subunit beta (EC:1.5.3.1); K00303 sarcosine oxidase, subunit beta [EC:1.5.3.1] rbh
sarcosine oxidase subunit beta n=1 Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI00026268C5 rbh
Sarcosine oxidase beta subunit {ECO:0000313|EMBL:AIJ24574.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
SCNpilot_cont_750_bf_scaffold_310_13
Mycobacterium cosmeticum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14063..14428)
DNA (366bp) protein (122aa)
Peroxiredoxins-like protein n=1 Tax=Mycobacterium rhodesiae JS60 RepID=G4I949_MYCRH
Putative peroxiredoxin {ECO:0000313|EMBL:CDO05975.1}; TaxID=258533 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium cosmeticum.;"
putative peroxiredoxin
SCNpilot_cont_750_bf_scaffold_310_14
unknown

Not on your lists

comp(14428..14859)
DNA (432bp) protein (144aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_310_15
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(14872..16443)
DNA (1572bp) protein (524aa)
Transcriptional regulator, LuxR family n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2H7_CONWI rbh
LuxR family transcriptional regulator rbh
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:ADB52243.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_cont_750_bf_scaffold_310_16
Rhodococcus sp. PML026, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16646..17308)
DNA (663bp) protein (221aa)
Dehydrogenase n=1 Tax=Rhodococcus sp. AW25M09 RepID=L8DBQ7_9NOCA rbh
Short chain dehydrogenase {ECO:0000313|EMBL:KJV01701.1}; TaxID=1356405 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. PML026.;"
dehydrogenase
SCNpilot_cont_750_bf_scaffold_310_17
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17346..18254)
DNA (909bp) protein (303aa)
Putative F420-dependent dehydrogenase n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RX20_BLASD rbh
putative F420-dependent dehydrogenase rbh
Putative F420-dependent dehydrogenase {ECO:0000313|EMBL:CCG03428.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
SCNpilot_cont_750_bf_scaffold_310_18
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18276..18503)
DNA (228bp) protein (76aa)
Pentapeptide repeat-containing protein n=1 Tax=Actinoplanes friuliensis DSM 7358 RepID=U5VSX8_9ACTO
pentapeptide repeat-containing protein
Pentapeptide repeat-containing protein {ECO:0000313|EMBL:AGZ39974.1}; TaxID=1246995 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
SCNpilot_cont_750_bf_scaffold_310_19
Streptomyces himastatinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18932..19741)
DNA (810bp) protein (270aa)
Putative uncharacterized protein n=1 Tax=Streptomyces himastatinicus ATCC 53653 RepID=D9WTP0_9ACTO rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EFL28434.1}; TaxID=457427 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces himastatinicus ATCC 53653.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_310_20
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19767..20030
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W3P6_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGZ42595.1}; TaxID=1246995 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
SCNpilot_cont_750_bf_scaffold_310_21
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20003..20203
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XHS2_MICPN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAK33217.1}; TaxID=1032480 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
SCNpilot_cont_750_bf_scaffold_310_22
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20204..21007)
DNA (804bp) protein (268aa)
enoyl-CoA hydratase; K01692 enoyl-CoA hydratase [EC:4.2.1.17] rbh
Enoyl-CoA hydratase/isomerase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CZM0_PSEUX rbh
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:AEA26692.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_750_bf_scaffold_310_23
Streptomyces pristinaespiralis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21223..21693)
DNA (471bp) protein (157aa)
Putative uncharacterized protein n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5HFU1_STRPR
Putative uncharacterized protein {ECO:0000313|EMBL:EDY65702.1}; TaxID=457429 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces pristinaespiralis ATCC 25486.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_310_24
Amycolatopsis sp. MJM2582, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21936..22397)
DNA (462bp) protein (154aa)
AsnC family transcriptional regulator n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2PHU1_9ACTO
AsnC family transcriptional regulator {ECO:0000313|EMBL:KFZ81690.1}; TaxID=1427749 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis sp. MJM2582.;"
asnC family protein
SCNpilot_cont_750_bf_scaffold_310_25
Nocardiopsis dassonvillei, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22479..23090
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2PQA1_9ACTO
lysine exporter LysE/YggA
Lysine exporter protein (LYSE/YGGA) {ECO:0000313|EMBL:ADH69134.1}; Flags: Precursor;; TaxID=446468 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 /; JCM 7437 / NCTC 10488) (Actinomadura dassonvillei).;"
SCNpilot_cont_750_bf_scaffold_310_26
Mycobacterium neoaurum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23232..24017)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Mycobacterium neoaurum VKM Ac-1815D RepID=V5XIH7_MYCNE rbh
Uncharacterized protein {ECO:0000313|EMBL:AHC27837.1}; TaxID=700508 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium neoaurum VKM Ac-1815D.;"
enoyl-CoA hydratase/isomerase rbh
SCNpilot_cont_750_bf_scaffold_310_27
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24002..24871)
DNA (870bp) protein (290aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:AEG47872.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AEG47872.1};; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EUH8_SPHCR
SCNpilot_cont_750_bf_scaffold_310_28
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24868..25332)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Sporichthya polymorpha RepID=UPI000373B5F4
Uncharacterized protein {ECO:0000313|EMBL:AIJ24650.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_310_29
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25329..26084)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Amycolatopsis methanolica RepID=UPI00035C97D0 rbh
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:AIJ24642.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
enoyl-CoA hydratase/isomerase
SCNpilot_cont_750_bf_scaffold_310_30
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26081..27715)
DNA (1635bp) protein (545aa)
hypothetical protein n=1 Tax=Amycolatopsis methanolica RepID=UPI0003741456 rbh
CoA-dependent ligase {ECO:0000313|EMBL:AIJ24643.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
coA-dependent ligase
Displaying items 1-30 of 76 in total

View Taxonomy