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SCNpilot_cont_750_bf_scaffold_1536

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_1536_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..1157)
DNA (1155bp) protein (385aa)
Class I and II aminotransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDC5_9GAMM rbh
Class I and II aminotransferase {ECO:0000313|EMBL:EIL97466.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
aspartate/tyrosine/aromatic aminotransferase rbh
SCNpilot_cont_750_bf_scaffold_1536_2
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1411..1668
DNA (258bp) protein (86aa)
Putative membrane protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L419_FRAAD
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AFC85613.1}; Flags: Precursor;; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
SCNpilot_cont_750_bf_scaffold_1536_3
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1745..2155)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000300AA55
Uncharacterized protein {ECO:0000313|EMBL:AHX13925.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1536_4
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2301..2810)
DNA (510bp) protein (170aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
peptidylprolyl isomerase n=1 Tax=Dyella japonica RepID=UPI00031E42C0
peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family
SCNpilot_cont_750_bf_scaffold_1536_5
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2915..4756)
DNA (1842bp) protein (614aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003819199 rbh
Hydrogenase {ECO:0000313|EMBL:KGI77418.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
3HB-oligomer hydrolase (3HBOH)
SCNpilot_cont_750_bf_scaffold_1536_6
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4876..5535
DNA (660bp) protein (220aa)
LuxR family transcriptional regulator n=1 Tax=Dyella japonica RepID=UPI0002D25B4B rbh
LuxR family transcriptional regulator {ECO:0000313|EMBL:KGI77374.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
SCNpilot_cont_750_bf_scaffold_1536_7
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5539..8859)
DNA (3321bp) protein (1107aa)
Putative two component regulator sensor histidine kinase/response regulator fusion transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WVA3_9GAMM
Histidine kinase {ECO:0000313|EMBL:KGI77375.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
signal transduction histidine kinase
SCNpilot_cont_750_bf_scaffold_1536_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9529..10554)
DNA (1026bp) protein (342aa)
Poly (3-hydroxybutyrate) depolymerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVA4_9GAMM
Poly (3-hydroxybutyrate) depolymerase {ECO:0000313|EMBL:EIL91453.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative esterase
SCNpilot_cont_750_bf_scaffold_1536_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10589..12814)
DNA (2226bp) protein (742aa)
Outer membrane receptor protein n=1 Tax=Rhodanobacter denitrificans RepID=M4ND64_9GAMM rbh
outer membrane receptor protein rbh
Outer membrane receptor protein {ECO:0000313|EMBL:AGG88675.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_1536_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12983..13603
DNA (621bp) protein (207aa)
transporter n=1 Tax=Dyella ginsengisoli RepID=UPI000347F9B3
Citrate transporter {ECO:0000313|EMBL:EIL96705.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
H+/gluconate symporter family protein
SCNpilot_cont_750_bf_scaffold_1536_11
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13591..14304
DNA (714bp) protein (238aa)
transporter n=1 Tax=Dyella japonica RepID=UPI000366F23A
Transporter {ECO:0000313|EMBL:KGI77376.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
H+/gluconate symporter family protein
SCNpilot_cont_750_bf_scaffold_1536_12
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14504..16330
DNA (1827bp) protein (609aa)
GTP-binding protein TypA/BipA n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L415_FRAAD rbh
GTP-binding protein TypA/BipA; K06207 GTP-binding protein rbh
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:AFC85609.1}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
SCNpilot_cont_750_bf_scaffold_1536_13
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17037..18161
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002FDDBD5 rbh
Secretion protein HylD {ECO:0000313|EMBL:AIF46679.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
RND family efflux transporter, MFP subunit; K15727 cobalt-zinc-cadmium resistance protein CzcB rbh
SCNpilot_cont_750_bf_scaffold_1536_14
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18154..21267
DNA (3114bp) protein (1038aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F04BB1 rbh
Membrane protein {ECO:0000313|EMBL:AIF46680.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
czcA; cobalt-zinc-cadmium resistance protein; K15726 cobalt-zinc-cadmium resistance protein CzcA rbh
SCNpilot_cont_750_bf_scaffold_1536_15
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21316..22797
DNA (1482bp) protein (494aa)
Heavy metal cation tricomponent efflux outer membrane porin ZneC (CzcC-like) n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LCD9_RALME rbh
zneC; heavy metal cation tricomponent efflux outer membrane porin ZneC rbh
Heavy metal cation tricomponent efflux outer membrane porin ZneC (CzcC-like) {ECO:0000313|EMBL:ABF12187.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
SCNpilot_cont_750_bf_scaffold_1536_16
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22839..24167
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002EA92A4 rbh
Porin {ECO:0000313|EMBL:AHX13934.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Carbohydrate-selective porin OprB rbh
Displaying 16 items

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