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SCNpilot_cont_750_bf_scaffold_547

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_547_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..734
DNA (732bp) protein (244aa)
Rod shape-determining protein MreB n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VQR5_9GAMM
Rod shape-determining protein MreB {ECO:0000313|EMBL:EIL89556.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
rod shape-determining protein MreB
SCNpilot_cont_750_bf_scaffold_547_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

747..1769
DNA (1023bp) protein (341aa)
Cell shape-determining protein MreC n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFU3_9GAMM rbh
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
rod shape-determining protein MreC rbh
SCNpilot_cont_750_bf_scaffold_547_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1766..2251
DNA (486bp) protein (162aa)
Rod shape-determining protein MreD n=1 Tax=Rhodanobacter denitrificans RepID=M4NDN6_9GAMM
rod shape-determining protein MreD
Rod shape-determining protein MreD {ECO:0000313|EMBL:AGG87568.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_547_4
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2267..4246
DNA (1980bp) protein (660aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129) rbh
Penicillin-binding protein 2 n=1 Tax=Rhodanobacter sp. 115 RepID=I4VQF7_9GAMM rbh
Penicillin-binding protein 2 {ECO:0000313|EMBL:EIL89448.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_cont_750_bf_scaffold_547_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4243..5382
DNA (1140bp) protein (380aa)
Cell elongation-specific peptidoglycan biosynthesis regulator RodA n=2 Tax=Rhodanobacter denitrificans RepID=M4NAL1_9GAMM
cell elongation-specific peptidoglycan biosynthesis regulator RodA
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_750_bf_scaffold_547_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5391..6395
DNA (1005bp) protein (335aa)
Lytic murein transglycosylase B n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VQR0_9GAMM rbh
Lytic murein transglycosylase B {ECO:0000313|EMBL:EIL89551.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
lytic murein transglycosylase B rbh
SCNpilot_cont_750_bf_scaffold_547_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6392..7324
DNA (933bp) protein (311aa)
Rare lipoprotein A n=1 Tax=Rhodanobacter sp. 115 RepID=I4VQG0_9GAMM rbh
Rare lipoprotein A {ECO:0000313|EMBL:EIL89451.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
rare lipoprotein A rbh
SCNpilot_cont_750_bf_scaffold_547_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7393..8655
DNA (1263bp) protein (421aa)
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VQG1_9GAMM rbh
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:EIL89452.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
penicillin-binding protein 6 rbh
SCNpilot_cont_750_bf_scaffold_547_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8655..8945
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NAP3_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87574.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_547_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9052..9759
DNA (708bp) protein (236aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" sourc
Octanoyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NAL4_9GAMM rbh
lipoate-protein ligase B rbh
SCNpilot_cont_750_bf_scaffold_547_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9770..10789
DNA (1020bp) protein (340aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Lipoyl synthase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VQG4_9GAMM rbh
lipoate synthase rbh
SCNpilot_cont_750_bf_scaffold_547_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10752..13037
DNA (2286bp) protein (762aa)
C-terminal processing peptidase n=3 Tax=Rhodanobacter denitrificans RepID=M4NCQ8_9GAMM rbh
C-terminal processing peptidase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_750_bf_scaffold_547_13
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13206..13814
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000315819B rbh
Membrane protein {ECO:0000313|EMBL:AIF49547.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_547_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14062..15807)
DNA (1746bp) protein (582aa)
Aminopeptidase N n=1 Tax=Rhodanobacter sp. 115 RepID=I4VQG6_9GAMM rbh
Aminopeptidase N {ECO:0000313|EMBL:EIL89457.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
aminopeptidase N rbh
SCNpilot_cont_750_bf_scaffold_547_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15957..17345)
DNA (1389bp) protein (463aa)
Leucyl aminopeptidase n=2 Tax=Rhodanobacter denitrificans RepID=M4NCR2_9GAMM rbh
leucyl aminopeptidase rbh
Leucyl aminopeptidase {ECO:0000313|EMBL:AGG87582.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_547_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17444..18142)
DNA (699bp) protein (233aa)
Haloacid dehalogenase superfamily enzyme, subfamily IA n=1 Tax=Rhodanobacter denitrificans RepID=M4NDP7_9GAMM
haloacid dehalogenase superfamily enzyme, subfamily IA
Haloacid dehalogenase superfamily enzyme, subfamily IA {ECO:0000313|EMBL:AGG87583.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_547_17
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18147..19484)
DNA (1338bp) protein (446aa)
Phosphate ABC transporter periplasmic protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VN55_9GAMM rbh
Phosphate ABC transporter periplasmic protein {ECO:0000313|EMBL:EIL88646.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ABC-type phosphate transport system, periplasmic component
SCNpilot_cont_750_bf_scaffold_547_18
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19641..21023)
DNA (1383bp) protein (461aa)
Protease Do n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VN56_9GAMM rbh
Protease Do {ECO:0000313|EMBL:EIL88647.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
periplasmic serine protease, Do/DeqQ family rbh
SCNpilot_cont_750_bf_scaffold_547_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21361..24645
DNA (3285bp) protein (1095aa)
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFS4_9GAMM rbh
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent {ECO:0000313|EMBL:EIL98315.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ribonucleotide reductase, alpha subunit rbh
SCNpilot_cont_750_bf_scaffold_547_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24691..25311
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034BDBAF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87587.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_547_21
Shewanella putrefaciens, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26993..27913
DNA (921bp) protein (307aa)
Putative uncharacterized protein n=1 Tax=Shewanella putrefaciens (strain 200) RepID=E6XLQ0_SHEP2
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADV56662.1}; TaxID=399804 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella putrefaciens (strain 200).;"
SCNpilot_cont_750_bf_scaffold_547_22
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28069..28548)
DNA (480bp) protein (160aa)
Universal stress protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HYS3_PARL1
UspA domain-containing protein
UspA domain protein {ECO:0000313|EMBL:ABS65056.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_750_bf_scaffold_547_23
Thalassospira xiamenensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28566..29780)
DNA (1215bp) protein (405aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1123366 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira xiamenensis M-5 = DSM 17429.;"
acetate kinase; K00925 acetate kinase [EC:2.7.2.1] rbh
Acetate kinase n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2KYN7_9PROT rbh
SCNpilot_cont_750_bf_scaffold_547_24
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29965..30921)
DNA (957bp) protein (319aa)
bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; K00625 phosphate acetyltransferase [EC:2.3.1.8]
Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UV45_PSEUP
Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase {ECO:0000313|EMBL:AER56325.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
SCNpilot_cont_750_bf_scaffold_547_25
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30918..33275)
DNA (2358bp) protein (786aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WC11_DELAC rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD37273.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
hypothetical protein rbh
SCNpilot_cont_750_bf_scaffold_547_26
unknown

Not on your lists

comp(33272..33409)
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_547_27
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33437..34189)
DNA (753bp) protein (251aa)
acetoacetyl-CoA reductase; K00023 acetoacetyl-CoA reductase [EC:1.1.1.36] rbh
Acetoacetyl-CoA reductase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UV43_PSEUP rbh
Acetoacetyl-CoA reductase {ECO:0000313|EMBL:AER56323.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
SCNpilot_cont_750_bf_scaffold_547_28
unknown

Not on your lists

comp(34186..34329)
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_547_29
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34360..35490)
DNA (1131bp) protein (377aa)
Membrane protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HXC0_9SPHN rbh
Membrane protein {ECO:0000313|EMBL:EQB16748.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
ABC transporter; K09686 antibiotic transport system permease protein rbh
SCNpilot_cont_750_bf_scaffold_547_30
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35492..38230)
DNA (2739bp) protein (913aa)
ABC transporter n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HUF9_9SPHN rbh
ABC transporter {ECO:0000313|EMBL:EQB16747.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
ABC transporter; K13926 ribosome-dependent ATPase rbh
Displaying items 1-30 of 71 in total

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