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SCNpilot_cont_750_bf_scaffold_649

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Displaying items 1-30 of 52 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_649_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..362
DNA (360bp) protein (120aa)
Cell division protein FtsZ n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8V2_9GAMM
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
cell division protein FtsZ
SCNpilot_cont_750_bf_scaffold_649_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

823..1737
DNA (915bp) protein (305aa)
UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase (EC:3.5.1.-) rbh
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVN8_9GAMM rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_750_bf_scaffold_649_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1862..2317)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NH97_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90330.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_649_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2516..5248
DNA (2733bp) protein (911aa)
Protein translocase subunit SecA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSK4_9GAMM rbh
preprotein translocase, SecA subunit rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_750_bf_scaffold_649_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5464..6315)
DNA (852bp) protein (284aa)
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical {ECO:0000256|SAAS:SAAS00088338}; EC=3.6.1.41 {ECO:0000256|SAAS:SAAS00088330};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Diadenosine tetraphosphatase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSK5_9GAMM rbh
symmetrical bis(5'-nucleosyl)-tetraphosphatase rbh
SCNpilot_cont_750_bf_scaffold_649_6
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6329..6634)
DNA (306bp) protein (102aa)
Protein ApaG n=1 Tax=Rhodanobacter sp. 115 RepID=I4WK31_9GAMM
uncharacterized protein affecting Mg2+/Co2+ transport
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
SCNpilot_cont_750_bf_scaffold_649_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6698..7504)
DNA (807bp) protein (269aa)
16S ribosomal RNA methyltransferase KsgA/Dim1 family protein {ECO:0000313|EMBL:EIL99823.1}; EC=2.1.1.- {ECO:0000313|EMBL:EIL99823.1};; Flags: Fragment;; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
dimethyladenosine transferase (EC:2.1.1.-) rbh
16S ribosomal RNA methyltransferase KsgA/Dim1 family protein (Fragment) n=1 Tax=Rhodanobacter sp. 115 RepID=I4WK32_9GAMM rbh
SCNpilot_cont_750_bf_scaffold_649_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7501..8538)
DNA (1038bp) protein (346aa)
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262) rbh
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVN0_9GAMM rbh
SCNpilot_cont_750_bf_scaffold_649_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8555..9916)
DNA (1362bp) protein (454aa)
Chaperone SurA n=1 Tax=Rhodanobacter denitrificans RepID=I4WVM9_9GAMM rbh
parvulin-like peptidyl-prolyl isomerase rbh
Chaperone SurA {ECO:0000256|HAMAP-Rule:MF_01183, ECO:0000256|SAAS:SAAS00043023}; Peptidyl-prolyl cis-trans isomerase SurA {ECO:0000256|HAMAP-Rule:MF_01183}; Rotamase SurA {ECO:0000256|HAMAP-Rule:MF_01183}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_649_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9948..12389)
DNA (2442bp) protein (814aa)
LPS-assembly protein LptD n=1 Tax=Rhodanobacter denitrificans RepID=I4WVM8_9GAMM rbh
LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00019908}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
organic solvent tolerance protein OstA rbh
SCNpilot_cont_750_bf_scaffold_649_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12581..13504)
DNA (924bp) protein (308aa)
Deacetylase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VKA8_9GAMM
Deacetylase {ECO:0000313|EMBL:EIL87649.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
deacetylase, histone deacetylase/acetoin utilization protein
SCNpilot_cont_750_bf_scaffold_649_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13514..14086)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJ39_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL87230.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ATP:cob(I)alamin adenosyltransferase rbh
SCNpilot_cont_750_bf_scaffold_649_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14089..14688)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVM5_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG90318.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_649_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14737..16011
DNA (1275bp) protein (425aa)
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC:1.14.13.-)
2-octaprenyl-6-methoxyphenol hydroxylase {ECO:0000313|EMBL:AGG90317.1}; EC=1.14.13.- {ECO:0000313|EMBL:AGG90317.1};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
2-octaprenyl-6-methoxyphenol hydroxylase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJN8_9GAMM
SCNpilot_cont_750_bf_scaffold_649_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16008..17210
DNA (1203bp) protein (401aa)
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WEV2_9GAMM rbh
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family rbh
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family {ECO:0000313|EMBL:AGG90316.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_649_16
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17257..18051
DNA (795bp) protein (265aa)
Dienelactone hydrolase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W550_9GAMM rbh
Dienelactone hydrolase {ECO:0000313|EMBL:EIL94591.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
dienelactone hydrolase-like enzyme rbh
SCNpilot_cont_750_bf_scaffold_649_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18127..19146)
DNA (1020bp) protein (340aa)
threonine aldolase (EC:4.1.2.5) rbh
Threonine aldolase {ECO:0000313|EMBL:AGG90307.1}; EC=4.1.2.5 {ECO:0000313|EMBL:AGG90307.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Threonine aldolase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJM5_9GAMM rbh
SCNpilot_cont_750_bf_scaffold_649_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19182..20279)
DNA (1098bp) protein (366aa)
Putative permease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVI8_9GAMM
Putative permease {ECO:0000313|EMBL:EIL91229.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative permease
SCNpilot_cont_750_bf_scaffold_649_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20276..21388)
DNA (1113bp) protein (371aa)
Putative permease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVI7_9GAMM rbh
Putative permease {ECO:0000313|EMBL:EIL91228.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative permease rbh
SCNpilot_cont_750_bf_scaffold_649_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21485..22972
DNA (1488bp) protein (496aa)
Probable cytosol aminopeptidase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNV5_9GAMM rbh
Probable cytosol aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucyl aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
aminopeptidase A rbh
SCNpilot_cont_750_bf_scaffold_649_21
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23065..23487
DNA (423bp) protein (141aa)
DNA polymerase III, chi subunit (EC:2.7.7.7)
DNA polymerase III subunit chi n=1 Tax=Dyella japonica RepID=UPI000301535B
DNA polymerase III subunit chi {ECO:0000313|EMBL:AIF49314.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCNpilot_cont_750_bf_scaffold_649_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23506..27075)
DNA (3570bp) protein (1190aa)
Signal transduction histidine kinase n=2 Tax=Rhodanobacter denitrificans RepID=M4NKV5_9GAMM rbh
Signal transduction histidine kinase {ECO:0000313|EMBL:AGG90313.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
signal transduction histidine kinase rbh
SCNpilot_cont_750_bf_scaffold_649_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27332..27889
DNA (558bp) protein (186aa)
Cytochrome B561 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W158_9GAMM rbh
Cytochrome B561 {ECO:0000313|EMBL:EIL93199.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cytochrome B561
SCNpilot_cont_750_bf_scaffold_649_24
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27910..28467
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDL4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97555.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_649_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28510..28746)
DNA (237bp) protein (79aa)
Glutaredoxin-like domain (DUF836) n=1 Tax=Rhodanobacter denitrificans RepID=M4ND81_9GAMM
Glutaredoxin-like domain (DUF836)
Glutaredoxin-like domain (DUF836) {ECO:0000313|EMBL:AGG87812.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_649_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28823..30205
DNA (1383bp) protein (461aa)
L-serine ammonia-lyase (EC:4.3.1.17) rbh
L-serine ammonia-lyase {ECO:0000313|EMBL:AGG87811.1}; EC=4.3.1.17 {ECO:0000313|EMBL:AGG87811.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
L-serine dehydratase n=1 Tax=Rhodanobacter denitrificans RepID=I4WT79_9GAMM rbh
SCNpilot_cont_750_bf_scaffold_649_27
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30385..32040
DNA (1656bp) protein (552aa)
amino acid transporter n=1 Tax=Dyella japonica RepID=UPI0002E350BE rbh
Amino acid transporter {ECO:0000313|EMBL:AHX12079.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
amino acid-polyamine-organocation superfamily protein rbh
SCNpilot_cont_750_bf_scaffold_649_28
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32838..34652
DNA (1815bp) protein (605aa)
ATP-dependent DNA helicase RecQ n=1 Tax=Rhodanobacter sp. 115 RepID=I4W1P1_9GAMM rbh
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:EIL93382.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ATP-dependent DNA helicase RecQ rbh
SCNpilot_cont_750_bf_scaffold_649_29
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34891..35148)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00031B0C78
Uncharacterized protein {ECO:0000313|EMBL:AIF47168.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCNpilot_cont_750_bf_scaffold_649_30
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35522..37021)
DNA (1500bp) protein (500aa)
aldehyde dehydrogenase; K14519 NADP-dependent aldehyde dehydrogenase [EC:1.2.1.4] rbh
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000363173F rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:ACU35435.1}; TaxID=446462 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
Displaying items 1-30 of 52 in total

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