ggKbase home page

SCNpilot_cont_750_bf_scaffold_5813

Search features with annotation key words

Displaying 23 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_5813_1
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..221)
DNA (219bp) protein (73aa)
transcriptional regulator n=1 Tax=Microbacterium sp. 292MF RepID=UPI000372C822
Transcriptional regulator {ECO:0000313|EMBL:KEP75453.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
SCNpilot_cont_750_bf_scaffold_5813_2
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(218..1744)
DNA (1527bp) protein (509aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI000367A1A0 rbh
signal transduction histidine kinase rbh
SCNpilot_cont_750_bf_scaffold_5813_3
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1796..3190)
DNA (1395bp) protein (465aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
fumC; fumarase; K01679 fumarate hydratase, class II [EC:4.2.1.2] rbh
Fumarate hydratase class II n=2 Tax=Microbacterium RepID=H8E7M4_9MICO rbh
SCNpilot_cont_750_bf_scaffold_5813_4
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3235..3888)
DNA (654bp) protein (218aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
cynT; carbonic anhydrase; K01673 carbonic anhydrase [EC:4.2.1.1]
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI00031C75EF rbh
SCNpilot_cont_750_bf_scaffold_5813_5
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3885..4526)
DNA (642bp) protein (214aa)
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit n=1 Tax=Microbacterium sp. TS-1 RepID=U2XHR1_9MICO
Amino acid transporter {ECO:0000313|EMBL:KHK98460.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
amino acid transporters
SCNpilot_cont_750_bf_scaffold_5813_6
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4523..4762)
DNA (240bp) protein (80aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
xseB; exonuclease VII small subunit; K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI000301FCA7
SCNpilot_cont_750_bf_scaffold_5813_7
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4759..5994)
DNA (1236bp) protein (412aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
exonuclease VII, large subunit; K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6] rbh
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002F6212F rbh
SCNpilot_cont_750_bf_scaffold_5813_8
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6150..6947
DNA (798bp) protein (266aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
ispH; penicillin tolerance protein; K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Microbacterium sp. B19 RepID=UPI00034B2856
SCNpilot_cont_750_bf_scaffold_5813_9
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6997..7566
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034DFD4C
Uncharacterized protein {ECO:0000313|EMBL:KHK98456.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_5813_10
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7663..8829
DNA (1167bp) protein (389aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036C66E1
Transmembrane anti-sigma factor {ECO:0000313|EMBL:KDA06537.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
transmembrane transcriptional regulator
SCNpilot_cont_750_bf_scaffold_5813_11
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(8908..9936)
DNA (1029bp) protein (343aa)
fba; fructose/tagatose bisphosphate aldolase; K01624 fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
fructose-bisphosphate aldolase n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036F6D32 rbh
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:KIF23555.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
SCNpilot_cont_750_bf_scaffold_5813_12
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

10116..11105
DNA (990bp) protein (330aa)
D-fructose 1,6-bisphosphatase class 2/sedoheptulose 1,7-bisphosphatase {ECO:0000256|PIRNR:PIRNR004532}; Short=FBPase class 2/SBPase {ECO:0000256|PIRNR:PIRNR004532};; EC=3.1.3.11 {ECO:0000256|PIRNR:PIRNR004532};; EC=3.1.3.37 {ECO:0000256|PIRNR:PIRNR004532};; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
glpX; fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase; K02446 fructose-1,6-bisphosphatase II [EC:3.1.3.11] rbh
fructose 1,6-bisphosphatase n=1 Tax=Microbacterium sp. 292MF RepID=UPI000362C5BE rbh
SCNpilot_cont_750_bf_scaffold_5813_13
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

11254..11496
DNA (243bp) protein (81aa)
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NBD2_MICTS
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase
UDP-N-acetylmuramyl pentapeptide phosphotransferase {ECO:0000313|EMBL:KIF23553.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
SCNpilot_cont_750_bf_scaffold_5813_14
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11477..12376)
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Microbacterium paraoxydans RepID=UPI0003637831 rbh
RmuC-domain protein {ECO:0000313|EMBL:EZP26986.1}; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
hypothetical protein; K09760 DNA recombination protein RmuC rbh
SCNpilot_cont_750_bf_scaffold_5813_15
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12370..12681)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AA84_9MICO
Recombinase RmuC {ECO:0000313|EMBL:KHK98451.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
hypothetical protein; K09760 DNA recombination protein RmuC
SCNpilot_cont_750_bf_scaffold_5813_16
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12725..13330)
DNA (606bp) protein (202aa)
DNA polymerase III PolC-type {ECO:0000313|EMBL:KJL34935.1}; EC=2.7.7.7 {ECO:0000313|EMBL:KJL34935.1};; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
DNA polymerase III subunit epsilon; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00037B9226 rbh
SCNpilot_cont_750_bf_scaffold_5813_17
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13443..14192
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K9K4_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:EQM78580.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
SAM-dependent methyltransferase
SCNpilot_cont_750_bf_scaffold_5813_18
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14231..14596
DNA (366bp) protein (122aa)
GTP-binding protein YchF n=1 Tax=Microbacterium yannicii RepID=UPI00036C39FF
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
GTP-dependent nucleic acid-binding protein EngD
SCNpilot_cont_750_bf_scaffold_5813_19
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14593..15219
DNA (627bp) protein (209aa)
Ribosome-binding ATPase YchF n=2 Tax=Microbacterium RepID=H8E7P2_9MICO
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
GTPase, probable translation factor; K06942
SCNpilot_cont_750_bf_scaffold_5813_20
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15168..15602)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI0003806D9F
Uncharacterized protein {ECO:0000313|EMBL:ERK70037.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_5813_21
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15923..16456
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B642B5
Alpha/beta hydrolase fold containing protein {ECO:0000313|EMBL:CDJ99161.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
SCNpilot_cont_750_bf_scaffold_5813_22
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16478..16996)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002D739B8
Transcriptional regulator (Modular protein) {ECO:0000313|EMBL:CDK01542.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
transcriptional regulator
SCNpilot_cont_750_bf_scaffold_5813_23
unknown

Not on your lists

17026..17112
DNA (87bp) protein (29aa)

This feature has no annotations

Displaying 23 items

View Taxonomy