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SCNpilot_cont_750_bf_scaffold_415

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Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_415_1
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..112)
DNA (111bp) protein (37aa)
RNA polymerase sigma factor RpoH n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SPV7_NITWN
RNA polymerase factor sigma-32; K03089 RNA polymerase sigma-32 factor
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_750_bf_scaffold_415_2
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(326..1303)
DNA (978bp) protein (326aa)
pseudouridine synthase (EC:4.2.1.70); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] rbh
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Pseudouridine synthase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SPV6_NITWN rbh
SCNpilot_cont_750_bf_scaffold_415_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1383..1715
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJH1_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63626.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_415_4
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2043..3083
DNA (1041bp) protein (347aa)
galE; UDP-glucose 4-epimerase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] rbh
UDP-glucose 4-epimerase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037AA41E rbh
UDP-glucose 4-epimerase {ECO:0000313|EMBL:ERF84775.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
SCNpilot_cont_750_bf_scaffold_415_5
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3934..4176)
DNA (243bp) protein (81aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YF05_9BRAD
Putative uncharacterized protein {ECO:0000313|EMBL:EHR01466.1}; Flags: Precursor;; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
SCNpilot_cont_750_bf_scaffold_415_6
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5355..5687
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034A370D
Uncharacterized protein {ECO:0000313|EMBL:KJC40962.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_415_7
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5665..7896
DNA (2232bp) protein (744aa)
ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QBB7_9BRAD
ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain {ECO:0000313|EMBL:EIG57073.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_cont_750_bf_scaffold_415_8
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7893..9323
DNA (1431bp) protein (477aa)
hemolysin secretion protein D n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B31F88
Hemolysin secretion protein D {ECO:0000313|EMBL:KGT78763.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
Type I secretion membrane fusion protein, HlyD; K02022 HlyD family secretion protein
SCNpilot_cont_750_bf_scaffold_415_9
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9613..10488)
DNA (876bp) protein (292aa)
Putative xylanase/chitin deacetylase n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YF12_9BRAD
Putative xylanase/chitin deacetylase {ECO:0000313|EMBL:EHR01473.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
polysaccharide deacetylase
SCNpilot_cont_750_bf_scaffold_415_10
Oscillatoriales cyanobacterium JSC-12, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

10922..11983
DNA (1062bp) protein (354aa)
Putative dehydrogenase n=1 Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GMJ9_9CYAN
Putative dehydrogenase {ECO:0000313|EMBL:EKQ70212.1}; TaxID=864702 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales.;" source="Oscillatoriales cyanobacterium JSC-12.;"
oxidoreductase domain-containing protein
SCNpilot_cont_750_bf_scaffold_415_11
Asticcacaulis benevestitus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12011..13330
DNA (1320bp) protein (440aa)
oxidoreductase domain-containing protein n=1 Tax=Pseudomonas geniculata RepID=UPI00029AC920 rbh
Uncharacterized protein {ECO:0000313|EMBL:ESQ91104.1}; TaxID=1121022 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896.;"
oxidoreductase domain-containing protein rbh
SCNpilot_cont_750_bf_scaffold_415_12
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13416..14255)
DNA (840bp) protein (280aa)
Glycosyl transferase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QBA4_9BRAD rbh
Glycosyl transferase family protein {ECO:0000313|EMBL:EJZ30871.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
glycosyl transferase
SCNpilot_cont_750_bf_scaffold_415_13
Streptomyces sp. NRRL S-104, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14342..15502)
DNA (1161bp) protein (387aa)
Putative lipoprotein n=1 Tax=Streptomyces turgidiscabies Car8 RepID=L7F0Y6_9ACTO
Lipoprotein {ECO:0000313|EMBL:KJY21474.1}; TaxID=1609135 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. NRRL S-104.;"
SCNpilot_cont_750_bf_scaffold_415_14
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15499..16848)
DNA (1350bp) protein (450aa)
hypothetical protein n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI0003621B8B rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHR01484.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_415_15

Not on your lists

comp(16890..17918)
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00037D3AF0 rbh
Marine sediment metagenome DNA, contig: S03H2_S01324 {ECO:0000313|EMBL:GAH61760.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
glycosyl transferase family protein
SCNpilot_cont_750_bf_scaffold_415_16
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17908..18885)
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00035EAC56 rbh
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACU35695.1}; TaxID=446462 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
SCNpilot_cont_750_bf_scaffold_415_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18945..20081)
DNA (1137bp) protein (379aa)
DegT/DnrJ/EryC1/StrS aminotransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJ16_NITHX rbh
DegT/DnrJ/EryC1/StrS aminotransferase rbh
DegT/DnrJ/EryC1/StrS aminotransferase {ECO:0000313|EMBL:ABE63781.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_415_18
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20078..21082)
DNA (1005bp) protein (335aa)
NAD-dependent epimerase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00036647FE rbh
NAD-dependent epimerase {ECO:0000313|EMBL:KGT79239.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
NAD-dependent epimerase/dehydratase
SCNpilot_cont_750_bf_scaffold_415_19
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21147..22256)
DNA (1110bp) protein (370aa)
Putative PLP-dependent enzyme possibly involved in cell wall biogenesis n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QBA8_9BRAD
Putative PLP-dependent enzyme possibly involved in cell wall biogenesis {ECO:0000313|EMBL:EIG57064.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
DegT/DnrJ/EryC1/StrS aminotransferase
SCNpilot_cont_750_bf_scaffold_415_20
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22414..22896)
DNA (483bp) protein (161aa)
acetyltransferase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI000374546A
Acetyltransferase {ECO:0000313|EMBL:KGT78757.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hexapaptide repeat-containing transferase
SCNpilot_cont_750_bf_scaffold_415_21
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22924..24411)
DNA (1488bp) protein (496aa)
Membrane protein involved in the export of O-antigen and teichoic acid n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QBA6_9BRAD rbh
Membrane protein involved in the export of O-antigen and teichoic acid {ECO:0000313|EMBL:EIG57062.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
polysaccharide biosynthesis protein rbh
SCNpilot_cont_750_bf_scaffold_415_22
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24456..25505)
DNA (1050bp) protein (350aa)
oxidoreductase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034B18CB rbh
Oxidoreductase {ECO:0000313|EMBL:KGT78756.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
oxidoreductase-like rbh
SCNpilot_cont_750_bf_scaffold_415_23
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25645..26157)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B6DAD7
Uncharacterized protein {ECO:0000313|EMBL:KGT78755.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_415_24
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26154..26654)
DNA (501bp) protein (167aa)
glycosyl transferase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B75BEA
Glycosyl transferase {ECO:0000313|EMBL:KGT79238.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
oligosaccharide biosynthesis protein Alg14-like protein
SCNpilot_cont_750_bf_scaffold_415_25
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27367..30525
DNA (3159bp) protein (1053aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJ24_NITHX
Uncharacterized protein {ECO:0000313|EMBL:KGT78752.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_415_26
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30605..32545
DNA (1941bp) protein (647aa)
type I secretion protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B75E5A rbh
Type I secretion system ABC transporter, PrtD family {ECO:0000313|EMBL:EHR01488.1}; Flags: Precursor;; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
Type I secretion system ATPase, PrtD
SCNpilot_cont_750_bf_scaffold_415_27
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32542..33855
DNA (1314bp) protein (438aa)
hemolysin secretion protein D n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034D575B
Hemolysin secretion protein D {ECO:0000313|EMBL:KGT78751.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
HlyD family type I secretion membrane fusion protein; K02022 HlyD family secretion protein
SCNpilot_cont_750_bf_scaffold_415_28
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33817..34071)
DNA (255bp) protein (85aa)
Putative insertion element (IS) transposase n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G7R2_9BRAD
putative insertion element (IS) transposase
Putative insertion element (IS) transposase {ECO:0000313|EMBL:BAL76799.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_cont_750_bf_scaffold_415_29
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34369..34626)
DNA (258bp) protein (86aa)
acyl carrier protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B56D48
acpP; acyl carrier protein
Acyl carrier protein {ECO:0000313|EMBL:AEH83870.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_cont_750_bf_scaffold_415_30
Mycobacterium vaccae, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34671..35897)
DNA (1227bp) protein (409aa)
diaminopimelate decarboxylase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B3A624
Pyridoxal-dependent decarboxylase exosortase system type 1 protein {ECO:0000313|EMBL:EJZ06970.1}; TaxID=1194972 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium vaccae ATCC 25954.;"
pyridoxal-dependent decarboxylase exosortase system type 1 protein
Displaying items 1-30 of 42 in total

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