ggKbase home page

SCNpilot_cont_750_bf_scaffold_4608

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_4608_1
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(411..1169)
DNA (759bp) protein (253aa)
Membrane protein n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HDJ0_9RHIZ rbh
Membrane protein {ECO:0000313|EMBL:ESZ54758.1}; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C120A0.;"
Conserved membrane protein of unknown function
SCNpilot_cont_750_bf_scaffold_4608_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1296..1571)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PDJ6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39636.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_4608_3
Mesorhizobium sp. LNJC405B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1617..1943)
DNA (327bp) protein (109aa)
Uncharacterized protein n=2 Tax=Mesorhizobium RepID=V7GIG7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX94576.1}; TaxID=1287281 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC405B00.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_4608_4
unknown

Not on your lists

2086..3120
DNA (1035bp) protein (345aa)
AraC family transcriptional regulator n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B56F92 rbh
Helix-turn-helix domain-containing protein AraC type {ECO:0000313|EMBL:CPR18095.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
AraC family transcriptional regulator rbh
SCNpilot_cont_750_bf_scaffold_4608_5
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3532..4212)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YAQ2_MESOW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH88812.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_cont_750_bf_scaffold_4608_6
unknown

Not on your lists

5078..5263
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_4608_7
unknown

Not on your lists

5353..5532
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_4608_8
unknown

Not on your lists

5671..5802
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_4608_9
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5969..6454
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKF3_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63294.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_4608_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6495..7037
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKF4_NITHX rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE63293.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_4608_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7207..8061)
DNA (855bp) protein (285aa)
RNA methyltransferase TrmH, group 3; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] rbh
RNA methyltransferase TrmH, group 3 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKF5_NITHX rbh
RNA methyltransferase TrmH, group 3 {ECO:0000313|EMBL:ABE63292.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_4608_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8945..10501
DNA (1557bp) protein (519aa)
Peptidoglycan transpeptidase, ErfK-YbiS-YhnG family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QGK6_NITHX
hypothetical protein
Peptidoglycan transpeptidase, ErfK-YbiS-YhnG family {ECO:0000313|EMBL:ABE64641.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_4608_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10728..11525
DNA (798bp) protein (266aa)
UspA n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIU6_NITHX
hypothetical protein
UspA {ECO:0000313|EMBL:ABE63851.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_4608_14
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11733..14852)
DNA (3120bp) protein (1040aa)
Acriflavin resistance protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B1B0_9RHIZ rbh
Acriflavin resistance protein {ECO:0000313|EMBL:AGK56743.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
acriflavin resistance protein rbh
SCNpilot_cont_750_bf_scaffold_4608_15
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14849..15058)
DNA (210bp) protein (70aa)
Membrane fusion protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXV7_9RHIZ
Membrane protein {ECO:0000313|EMBL:KGD96969.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
membrane fusion protein
SCNpilot_cont_750_bf_scaffold_4608_16
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15859..16062)
DNA (204bp) protein (68aa)
sulfurtransferase n=1 Tax=Martelella mediterranea RepID=UPI00036DD547
Sulfurtransferase {ECO:0000313|EMBL:KGD96968.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_4608_17
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16211..17338)
DNA (1128bp) protein (376aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Methyloferula stellata RepID=UPI0003740BDA
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:KGD96967.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
sulfide-quinone reductase
SCNpilot_cont_750_bf_scaffold_4608_18
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17515..17844
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036B436C
ArsR family transcriptional regulator {ECO:0000313|EMBL:EZQ13527.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
regulatory protein ArsR
SCNpilot_cont_750_bf_scaffold_4608_19
unknown

Not on your lists

comp(18056..18199)
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_4608_20
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18860..19510
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKG4_NITHX rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE63283.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_4608_21
unknown

Not on your lists

20042..20188
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_4608_22
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20270..20473)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I5Q6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EJN15813.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_4608_23
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21032..21448
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X081_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ34356.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_4608_24
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21594..22157)
DNA (564bp) protein (188aa)
Nitroreductase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMR2_NITHX
nitroreductase
Nitroreductase {ECO:0000313|EMBL:ABE62485.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_4608_25
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22219..22572)
DNA (354bp) protein (118aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
Threonine--tRNA ligase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WZG8_9BRAD
Displaying 25 items

View Taxonomy