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SCNpilot_cont_750_bf_scaffold_10936

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_10936_1
unknown

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2..838
DNA (837bp) protein (279aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_10936_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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838..1803
DNA (966bp) protein (322aa)
pseudouridine synthase, Rsu; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Pseudouridine synthase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIP1_NITHX
SCNpilot_cont_750_bf_scaffold_10936_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1873..2283
DNA (411bp) protein (137aa)
hypothetical protein; K08316 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
RsmD family RNA methyltransferase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NG72_AFIFE
RsmD family RNA methyltransferase {ECO:0000313|EMBL:EKS29482.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_cont_750_bf_scaffold_10936_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2462..4081)
DNA (1620bp) protein (540aa)
DNA mismatch repair protein MutL n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=MUTL_NITHX
mutL; DNA mismatch repair protein; K03572 DNA mismatch repair protein MutL
DNA mismatch repair protein MutL {ECO:0000255|HAMAP-Rule:MF_00149}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_10936_5
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4078..4194)
DNA (117bp) protein (39aa)
DNA mismatch repair protein MutL n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=MUTL_RHOPB
mutL; DNA mismatch repair protein; K03572 DNA mismatch repair protein MutL
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_750_bf_scaffold_10936_6
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4296..6422)
DNA (2127bp) protein (709aa)
2-keto-gluconate dehydrogenase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002F10458 rbh
Bradyrhizobium elkanii strain UASWS1015 Contig174, whole genome shotgun sequence {ECO:0000313|EMBL:KIU49184.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
2-keto-gluconate dehydrogenase rbh
SCNpilot_cont_750_bf_scaffold_10936_7
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6456..6923)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RSY8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD85065.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_10936_8
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6957..7352)
DNA (396bp) protein (132aa)
lactoylglutathione lyase; K01759 lactoylglutathione lyase [EC:4.4.1.5]
lactoylglutathione lyase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000302C345
Lactoylglutathione lyase {ECO:0000313|EMBL:ERF83186.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
SCNpilot_cont_750_bf_scaffold_10936_9
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7542..7982)
DNA (441bp) protein (147aa)
Class I peptide chain release factor n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIP5_NITHX
peptidyl-tRNA hydrolase domain-containing protein; K15034 ribosome-associated protein
Uncharacterized protein {ECO:0000313|EMBL:EAQ33905.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_750_bf_scaffold_10936_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8247..9644)
DNA (1398bp) protein (466aa)
Peptidase M16-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIP6_NITHX rbh
peptidase M16-like rbh
Peptidase M16-like protein {ECO:0000313|EMBL:ABE63901.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_10936_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9641..10612)
DNA (972bp) protein (324aa)
Peptidase M16-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIP7_NITHX
peptidase M16-like
Peptidase M16-like protein {ECO:0000313|EMBL:ABE63900.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_10936_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11153..11872)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIP8_NITHX rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE63899.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_10936_13
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11951..12472)
DNA (522bp) protein (174aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36]
Lipoprotein signal peptidase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1I8_9BRAD
SCNpilot_cont_750_bf_scaffold_10936_14
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12537..13514)
DNA (978bp) protein (326aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
ileS; isoleucyl-tRNA synthetase (EC:6.1.1.5); K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5]
Isoleucine--tRNA ligase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1I7_9BRAD
Displaying 14 items

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