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SCNpilot_cont_750_bf_scaffold_1369

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Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_1369_1
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..383)
DNA (381bp) protein (127aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIN7_9PROT
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:CCU62313.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
biopolymer transport protein ExbD/TolR; K03559 biopolymer transport protein ExbD
SCNpilot_cont_750_bf_scaffold_1369_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(383..1132)
DNA (750bp) protein (250aa)
MotA/TolQ/ExbB proton channel family protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI80_9PROT rbh
MotA/TolQ/ExbB proton channel family protein {ECO:0000313|EMBL:CCU62314.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
MotA/TolQ/ExbB proton channel; K03561 biopolymer transport protein ExbB rbh
SCNpilot_cont_750_bf_scaffold_1369_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1137..1748)
DNA (612bp) protein (204aa)
Ferric siderophore transport system, periplasmic binding protein TonB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DSF2_9PROT rbh
Ferric siderophore transport system, periplasmic binding protein TonB {ECO:0000313|EMBL:CCU62315.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
TonB-like protein; K03832 periplasmic protein TonB
SCNpilot_cont_750_bf_scaffold_1369_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1792..2343)
DNA (552bp) protein (184aa)
InterPro IPR000063 COGs COG0526 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGF1_9PROT
Signal peptide protein {ECO:0000313|EMBL:KIO50092.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
signal peptide protein
SCNpilot_cont_750_bf_scaffold_1369_5
unknown

Not on your lists

2379..2471
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1369_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2825..3445
DNA (621bp) protein (207aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABF5_9PROT
RNA polymerase subunit sigma-70 {ECO:0000313|EMBL:KIO50091.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
RNA polymerase, sigma-24 subunit, ECF subfamily
SCNpilot_cont_750_bf_scaffold_1369_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3442..3804
DNA (363bp) protein (121aa)
Probable transmembrane protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIP0_9PROT
Probable transmembrane protein {ECO:0000313|EMBL:CCU62318.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1369_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3786..4178
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI84_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62319.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1369_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4234..4680
DNA (447bp) protein (149aa)
Probable transmembrane protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DSF6_9PROT
Membrane protein {ECO:0000313|EMBL:KIO49818.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
RDD
SCNpilot_cont_750_bf_scaffold_1369_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4734..6194)
DNA (1461bp) protein (487aa)
TldD protein, part of proposed TldE/TldD proteolytic complex n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGF5_9PROT rbh
TldD protein, part of proposed TldE/TldD proteolytic complex {ECO:0000313|EMBL:CCU62321.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
peptidase U62, modulator of DNA gyrase; K03568 TldD protein rbh
SCNpilot_cont_750_bf_scaffold_1369_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6220..7077)
DNA (858bp) protein (286aa)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; K01501 nitrilase [EC:3.5.5.1] rbh
FIG003879: Predicted amidohydrolase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIC8_9PROT rbh
Acyltransferase {ECO:0000313|EMBL:KIO49816.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_750_bf_scaffold_1369_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7435..11004)
DNA (3570bp) protein (1190aa)
FIG005080: Possible exported protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIP4_9PROT rbh
FIG005080: Possible exported protein {ECO:0000313|EMBL:CCU62323.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein rbh
SCNpilot_cont_750_bf_scaffold_1369_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11480..14239
DNA (2760bp) protein (920aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015000}; EC=2.7.7.42 {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015004};; Glutamine-synthase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; [Glutamate--ammonia-ligase] adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase (EC:2.7.7.42); K00982 glutamate-ammonia-ligase adenylyltransferase [EC:2.7.7.42] rbh
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI86_9PROT rbh
SCNpilot_cont_750_bf_scaffold_1369_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14378..15298
DNA (921bp) protein (307aa)
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:KIO49815.1}; EC=2.6.1.42 {ECO:0000313|EMBL:KIO49815.1};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] rbh
Branched-chain amino acid aminotransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGF8_9PROT rbh
SCNpilot_cont_750_bf_scaffold_1369_15
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15308..15544
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DID1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62327.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1369_16
unknown

Not on your lists

comp(15425..15805)
DNA (381bp) protein (127aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1369_17
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15812..17188
DNA (1377bp) protein (459aa)
Phosphoglucomutase {ECO:0000313|EMBL:KIO49814.1}; EC=5.4.2.2 {ECO:0000313|EMBL:KIO49814.1};; EC=5.4.2.8 {ECO:0000313|EMBL:KIO49814.1};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
phosphomannomutase (EC:5.4.2.8); K15778 phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] rbh
Phosphomannomutase / Phosphoglucomutase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIP5_9PROT rbh
SCNpilot_cont_750_bf_scaffold_1369_18
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17195..17722
DNA (528bp) protein (176aa)
Low molecular weight protein tyrosine phosphatase {ECO:0000313|EMBL:CCU62330.1}; EC=3.1.3.48 {ECO:0000313|EMBL:CCU62330.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
protein tyrosine phosphatase; K01104 protein-tyrosine phosphatase [EC:3.1.3.48]
Low molecular weight protein tyrosine phosphatase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DSG7_9PROT
SCNpilot_cont_750_bf_scaffold_1369_19
unknown

Not on your lists

17742..17852
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1369_20
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17918..20761)
DNA (2844bp) protein (948aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
ribonuclease; K08300 ribonuclease E [EC:3.1.26.12] rbh
Ribonuclease E n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGG2_9PROT rbh
SCNpilot_cont_750_bf_scaffold_1369_21
unknown

Not on your lists

20765..21052
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1369_22
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21222..22199
DNA (978bp) protein (326aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028, ECO:0000313|EMBL:KIO50088.1}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
pseudouridine synthase RluD; K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] rbh
Pseudouridine synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DID4_9PROT rbh
SCNpilot_cont_750_bf_scaffold_1369_23
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22315..23265
DNA (951bp) protein (317aa)
peptidase S49; K04773 protease IV [EC:3.4.21.-] rbh
Periplasmic serine proteases (ClpP class) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIP9_9PROT rbh
Peptidase S49 {ECO:0000313|EMBL:KIO49808.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Displaying 23 items

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