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SCNpilot_cont_750_bf_scaffold_395

Search features with annotation key words

Displaying items 1-30 of 127 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_395_1
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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437..985
DNA (549bp) protein (183aa)
phosphatase kdsC (EC:3.1.3.45); K03270 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
Phosphatase kdsC {ECO:0000313|EMBL:ABB73397.1}; EC=3.1.3.45 {ECO:0000313|EMBL:ABB73397.1};; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Phosphatase kdsC n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCX4_NITMU
SCNpilot_cont_750_bf_scaffold_395_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1114..1551
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHC5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61718.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein; K11719 lipopolysaccharide export system protein LptC
SCNpilot_cont_750_bf_scaffold_395_3
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1621..2121
DNA (501bp) protein (167aa)
OstA-like protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCX6_NITMU
OstA-like protein; K09774 lipopolysaccharide export system protein LptA
Lipopolysaccharide export system protein LptA {ECO:0000256|HAMAP-Rule:MF_01914}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_750_bf_scaffold_395_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2153..2875
DNA (723bp) protein (241aa)
ABC transporter-like protein; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-] rbh
Lipopolysaccharide ABC transporter, ATP-binding protein LptB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFA9_9PROT rbh
Lipopolysaccharide ABC transporter, ATP-binding protein LptB {ECO:0000313|EMBL:CCU61716.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_cont_750_bf_scaffold_395_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2919..4400
DNA (1482bp) protein (494aa)
RNA polymerase sigma-54 factor n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQL5_9PROT rbh
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
sigma-54 (RpoN); K03092 RNA polymerase sigma-54 factor rbh
SCNpilot_cont_750_bf_scaffold_395_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4419..4748
DNA (330bp) protein (110aa)
Ribosome hibernation protein YhbH n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGV8_9PROT
Ribosome hibernation promoting factor HPF {ECO:0000313|EMBL:KIO49545.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
sigma 54 modulation protein/30S ribosomal protein S30EA; K05808 putative sigma-54 modulation protein
SCNpilot_cont_750_bf_scaffold_395_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4875..5822
DNA (948bp) protein (316aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;
HPr kinase/phosphorylase; K06023 HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] rbh
HPr kinase/phosphorylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHC1_9PROT rbh
SCNpilot_cont_750_bf_scaffold_395_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5942..6781
DNA (840bp) protein (280aa)
UPF0042 nucleotide-binding protein Nmul_A0081 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Y081_NITMU rbh
Nucleotide-binding protein SQ11_05270 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein; K06958 UPF0042 nucleotide-binding protein rbh
SCNpilot_cont_750_bf_scaffold_395_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6880..7518
DNA (639bp) protein (213aa)
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
aromatic acid decarboxylase; K03186 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiX [EC:4.1.1.-] rbh
3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFA8_9PROT rbh
SCNpilot_cont_750_bf_scaffold_395_10
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7547..8194)
DNA (648bp) protein (216aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCY3_NITMU
5-formyltetrahydrofolate cyclo-ligase
SCNpilot_cont_750_bf_scaffold_395_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8221..9342)
DNA (1122bp) protein (374aa)
A/G-specific adenine glycosylase; K03575 A/G-specific adenine glycosylase [EC:3.2.2.-] rbh
A/G-specific DNA-adenine glycosylase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCY4_NITMU rbh
Adenine glycosylase {ECO:0000313|EMBL:KIO49549.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_750_bf_scaffold_395_12
unknown

Not on your lists

9528..9728
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_395_13
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9960..10727)
DNA (768bp) protein (256aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2ICW6_BEII9 rbh
Oxidoreductase {ECO:0000313|EMBL:KGY16328.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_cont_750_bf_scaffold_395_14
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11171..11773)
DNA (603bp) protein (201aa)
Undecaprenyl diphosphate phosphatase, putative n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EDG8_GEOBB
undecaprenyl diphosphate phosphatase
Undecaprenyl diphosphate phosphatase, putative {ECO:0000313|EMBL:ACH39164.1}; TaxID=404380 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622).;"
SCNpilot_cont_750_bf_scaffold_395_15
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12103..14046
DNA (1944bp) protein (648aa)
DedA family n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2HKF5_BURVI rbh
DedA family {ECO:0000313|EMBL:ERJ40944.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
PA-phosphatase-like phosphoesterase
SCNpilot_cont_750_bf_scaffold_395_16
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14226..14489
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2G907_BURVI
Uncharacterized protein {ECO:0000313|EMBL:ERJ39817.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
putative Thioredoxin/glutaredoxin
SCNpilot_cont_750_bf_scaffold_395_17
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14626..14916
DNA (291bp) protein (97aa)
Transcriptional regulator, MerR family n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2HNN3_BURVI
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ERJ39818.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
MerR family transcriptional regulator; K13638 MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
SCNpilot_cont_750_bf_scaffold_395_18
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14913..15176
DNA (264bp) protein (88aa)
Thioredoxin/glutaredoxin n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2HH95_BURVI
Thioredoxin/glutaredoxin {ECO:0000313|EMBL:ERJ39819.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
putative Thioredoxin/glutaredoxin
SCNpilot_cont_750_bf_scaffold_395_19
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15166..15861
DNA (696bp) protein (232aa)
Cytochrome c biogenesis protein, transmembrane region n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2G9Q4_BURVI rbh
Cytochrome c biogenesis protein, transmembrane region {ECO:0000313|EMBL:ERJ39820.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
putative Cytochrome c biogenesis protein
SCNpilot_cont_750_bf_scaffold_395_20
endosymbiont of Tevnia jerichonana, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15871..16269
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FDF7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EGW55243.1}; TaxID=1049564 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Tevnia jerichonana (vent Tica).;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_395_21
unknown

Not on your lists

16295..16486
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_395_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16748..17395
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000362CE09
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_cont_750_bf_scaffold_395_23
Aeromonas salmonicida, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17497..18273)
DNA (777bp) protein (259aa)
Uncharacterized protein n=25 Tax=Gammaproteobacteria RepID=G0XBZ5_ECOLX rbh
urf2; EAL domain-containing protein Urf2 rbh
Uncharacterized protein {ECO:0000313|EMBL:AIM49557.1}; TaxID=29491 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas salmonicida subsp. salmonicida.;"
SCNpilot_cont_750_bf_scaffold_395_24
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18495..18734)
DNA (240bp) protein (80aa)
Mercuric transport protein, MerE n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2G9P9_BURVI
Mercuric transport protein, MerE {ECO:0000313|EMBL:ERJ39815.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
MerE family protein
SCNpilot_cont_750_bf_scaffold_395_25
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18727..19008)
DNA (282bp) protein (94aa)
Mercuric resistance operon coregulator n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2HH89_BURVI
Mercuric resistance operon coregulator {ECO:0000313|EMBL:ERJ39814.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
mercuric resistance transcriptional repressor MerD
SCNpilot_cont_750_bf_scaffold_395_26
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19031..20716)
DNA (1686bp) protein (562aa)
Mercuric reductase {ECO:0000256|RuleBase:RU361223}; EC=1.16.1.1 {ECO:0000256|RuleBase:RU361223};; Hg(II) reductase {ECO:0000256|RuleBase:RU361223}; TaxID=90370 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella typhi.;"
Mercuric reductase n=2 Tax=Klebsiella pneumoniae subsp. pneumoniae RepID=K1MIL8_KLEPN
mercuric reductase
SCNpilot_cont_750_bf_scaffold_395_27

Not on your lists

comp(20757..21179)
DNA (423bp) protein (141aa)
Mercuric transport protein, MerC n=2 Tax=Bacteria RepID=M3FG71_STEMA
MerC protein {ECO:0000313|EMBL:CAC79203.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
merC; mercury transport protein MerC
SCNpilot_cont_750_bf_scaffold_395_28

Not on your lists

comp(21209..21496)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EHF9_9BACT
Periplasmic mercury ion-binding protein {ECO:0000256|RuleBase:RU361212}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
mercuric transport protein periplasmic component MerP
SCNpilot_cont_750_bf_scaffold_395_29

Not on your lists

comp(21510..21860)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2G4F7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE18075.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
putative mercuric transport protein; K08363 mercuric ion transport protein
SCNpilot_cont_750_bf_scaffold_395_30

Not on your lists

21932..22366
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FJV8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE18074.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
merR; mercuric resistance operon regulatory protein; K08365 MerR family transcriptional regulator, mercuric resistance operon regulatory protein
Displaying items 1-30 of 127 in total

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