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SCNpilot_cont_750_bf_scaffold_4318

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_4318_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..592
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035C92E2
Sphingomonas taxi strain 30a NODE_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29529.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein; K03478 hypothetical protein
SCNpilot_cont_750_bf_scaffold_4318_2
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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599..1135
DNA (537bp) protein (179aa)
RNA polymerase sigma-70 factor n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA5F9
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:AIT05927.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_750_bf_scaffold_4318_3
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1128..2063
DNA (936bp) protein (312aa)
anti-FecI sigma factor FecR n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDDFE
Uncharacterized protein {ECO:0000313|EMBL:AIT05926.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
anti-FecI sigma factor FecR
SCNpilot_cont_750_bf_scaffold_4318_4
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2131..4365
DNA (2235bp) protein (745aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000289E6D4 rbh
TonB-dependent Receptor Plug domain protein {ECO:0000313|EMBL:EZP57475.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
TonB-dependent receptor, plug
SCNpilot_cont_750_bf_scaffold_4318_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4406..5683)
DNA (1278bp) protein (426aa)
sdhA; succinate dehydrogenase/fumarate reductase flavoprotein subunit (EC:1.3.5.1); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1]
succinate dehydrogenase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B70820
Fumarate reductase {ECO:0000313|EMBL:AJP73821.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_750_bf_scaffold_4318_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5718..6137)
DNA (420bp) protein (140aa)
sdhA; succinate dehydrogenase/fumarate reductase flavoprotein subunit (EC:1.3.5.1); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1]
succinate dehydrogenase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000288882A
Fumarate reductase {ECO:0000313|EMBL:AJP73821.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_750_bf_scaffold_4318_7
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6137..6520)
DNA (384bp) protein (128aa)
succinate dehydrogenase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4B0DC
Succinate dehydrogenase {ECO:0000313|EMBL:KHA63260.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
succinate dehydrogenase hydrophobic membrane anchor protein
SCNpilot_cont_750_bf_scaffold_4318_8
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6520..6867)
DNA (348bp) protein (116aa)
succinate dehydrogenase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B36DD1
Succinate dehydrogenase {ECO:0000313|EMBL:KHA63259.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
succinate dehydrogenase cytochrome b556 subunit; K00241 succinate dehydrogenase cytochrome b556 subunit
SCNpilot_cont_750_bf_scaffold_4318_9
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7329..8381
DNA (1053bp) protein (351aa)
methyl-accepting chemotaxis protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B74F83
Chemotaxis protein {ECO:0000313|EMBL:KHA63258.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
pilJ; twitching motility protein PilJ
SCNpilot_cont_750_bf_scaffold_4318_10
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8426..9190
DNA (765bp) protein (255aa)
ribosomal L11 methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-]
ribose 1,5-bisphosphate phosphokinase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3EEE4
Ribosomal protein L11 methyltransferase {ECO:0000313|EMBL:GAO39437.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
Displaying 10 items

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