ggKbase home page

SCNpilot_cont_750_bf_scaffold_9324

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_9324_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..620)
DNA (618bp) protein (206aa)
dTDP-4-dehydrorhamnose reductase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B68165
Sphingomonas taxi strain 30a NODE_13, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28262.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_9324_2
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(620..1675)
DNA (1056bp) protein (352aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
dTDP-glucose 4,6-dehydratase (EC:4.2.1.46); K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] rbh
dTDP-glucose 4,6-dehydratase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5AABE
SCNpilot_cont_750_bf_scaffold_9324_3
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1684..2250)
DNA (567bp) protein (189aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13); K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B306F7
dTDP-L-rhamnose biosynthesis protein {ECO:0000313|EMBL:EZP55133.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_cont_750_bf_scaffold_9324_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2306..3202)
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000382231A rbh
Sphingomonas taxi strain 30a NODE_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29531.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
D-isomer specific 2-hydroxyacid dehydrogenase
SCNpilot_cont_750_bf_scaffold_9324_5
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3250..4353
DNA (1104bp) protein (368aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036BFE1E
Sphingomonas taxi strain 30a NODE_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29532.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
peptidase M48, Ste24p
SCNpilot_cont_750_bf_scaffold_9324_6
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4707..5765)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WB01_9SPHN rbh
hypothetical protein rbh
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_cont_750_bf_scaffold_9324_7
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5837..7213)
DNA (1377bp) protein (459aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
cysteinyl-tRNA synthetase; K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
cysteinyl-tRNA synthetase n=1 Tax=Sphingomonas melonis RepID=UPI00036888C0
SCNpilot_cont_750_bf_scaffold_9324_8
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7589..8887)
DNA (1299bp) protein (433aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
two-component sensor histidine kinase (EC:2.7.13.3)
integral membrane sensor signal transduction histidine kinase n=1 Tax=Sphingomonas elodea RepID=UPI0002630AF8 rbh
SCNpilot_cont_750_bf_scaffold_9324_9
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8871..9605)
DNA (735bp) protein (245aa)
transcriptional regulator n=1 Tax=Sphingomonas elodea RepID=UPI0002630AF7 rbh
Response regulator(With CheY-like receiver domain and winged-helix DNA-binding domain) {ECO:0000313|EMBL:EZP53853.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
SCNpilot_cont_750_bf_scaffold_9324_10
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9791..9997
DNA (207bp) protein (69aa)
30S ribosomal protein S21 n=1 Tax=Sphingomonas sp. S17 RepID=F3WW25_9SPHN
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
rpsU; 30S ribosomal protein S21; K02970 small subunit ribosomal protein S21
SCNpilot_cont_750_bf_scaffold_9324_11
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10205..10633
DNA (429bp) protein (143aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036BD456
FKBP-type peptidylprolyl isomerase
SCNpilot_cont_750_bf_scaffold_9324_12
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10725..10955)
DNA (231bp) protein (77aa)
Serine/threonine-protein phosphatase 1 {ECO:0000313|EMBL:AKH42513.1}; EC=3.1.3.16 {ECO:0000313|EMBL:AKH42513.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
metallophosphoesterase; K07313 serine/threonine protein phosphatase 1 [EC:3.1.3.16]
Metallophosphoesterase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GUA5_9PROT
Displaying 12 items

View Taxonomy