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SCNpilot_cont_750_bf_scaffold_11403

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_11403_1
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..854)
DNA (852bp) protein (284aa)
Amidohydrolase 2 n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ID58_9SPHN
amidohydrolase 2
Amidohydrolase 2 {ECO:0000313|EMBL:CCA90233.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_750_bf_scaffold_11403_2
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(856..1500)
DNA (645bp) protein (215aa)
AMP-dependent synthetase and ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XEU7_NOVAD
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABP64458.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_750_bf_scaffold_11403_3
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1464..2435)
DNA (972bp) protein (324aa)
AMP-dependent synthetase and ligase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ID59_9SPHN
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:CCA90234.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_750_bf_scaffold_11403_4
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2710..3954
DNA (1245bp) protein (415aa)
Putative NADH:flavin oxidoreductase n=1 Tax=Pseudomonas sp. Chol1 RepID=K5XF81_9PSED rbh
Flavin oxidoreductase {ECO:0000313|EMBL:KEO86234.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
putative NADH:flavin oxidoreductase rbh
SCNpilot_cont_750_bf_scaffold_11403_5
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4079..4360)
DNA (282bp) protein (94aa)
ETC complex I subunit n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC041
ETC complex subunit I {ECO:0000313|EMBL:KHA64040.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_11403_6
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4617..5303)
DNA (687bp) protein (229aa)
ATP-dependent helicase HrpB n=1 Tax=Sphingomonas sp. S17 RepID=F3X2Y4_9SPHN
Putative ATP-dependent helicase {ECO:0000313|EMBL:GAM02913.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
ATP-dependent helicase HrpB
SCNpilot_cont_750_bf_scaffold_11403_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5338..5907)
DNA (570bp) protein (190aa)
ATP-dependent helicase HrpB; K03579 ATP-dependent helicase HrpB [EC:3.6.4.13]
ATP-dependent helicase n=1 Tax=Sphingomonas elodea RepID=UPI0002630FF0
ATP-dependent helicase {ECO:0000313|EMBL:AJP73279.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_750_bf_scaffold_11403_8
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6014..6289
DNA (276bp) protein (92aa)
Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
SCNpilot_cont_750_bf_scaffold_11403_9
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6806..7663)
DNA (858bp) protein (286aa)
pfkB; ribokinase family sugar kinase (EC:2.7.1.-)
carbohydrate kinase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B41809
Putative sugar kinase {ECO:0000313|EMBL:GAM00846.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_cont_750_bf_scaffold_11403_10
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7856..8524
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036C7B98
DNA, contig: SP604 {ECO:0000313|EMBL:GAN12121.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_11403_11
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8521..8877
DNA (357bp) protein (119aa)
Putative lipoprotein n=1 Tax=Sphingomonas sp. S17 RepID=F3X0G3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAM00848.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_11403_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8944..9525)
DNA (582bp) protein (194aa)
iron transporter n=1 Tax=Sphingomonas melonis RepID=UPI00036CA4CE
Ferrous iron transporter {ECO:0000313|EMBL:AIT07678.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
cation diffusion facilitator family transporter
Displaying 12 items

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