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SCNpilot_cont_750_bf_scaffold_151

Search features with annotation key words

Displaying items 1-30 of 240 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_151_1
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..140)
DNA (138bp) protein (46aa)
Putative outer membrane protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6J419_9RHOB
Putative outer membrane protein {ECO:0000313|EMBL:EJW11285.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_151_2
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

696..2438
DNA (1743bp) protein (581aa)
TPR repeat n=1 Tax=Nitrosospira sp. APG3 PF4_9PROT">RepID=M5DPF4_9PROT rbh
tetratricopeptide repeat protein,methyltransferase family protein rbh
Tax=GWA2_Rhodocyclales_65_20_curated
SCNpilot_cont_750_bf_scaffold_151_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2732..3040)
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IXB3_RHOP2
hypothetical protein; K07126
Uncharacterized protein {ECO:0000313|EMBL:ABD07147.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_750_bf_scaffold_151_4
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3408..3854
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QI14_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EIG59420.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_151_5
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3917..4762)
DNA (846bp) protein (282aa)
glutathione S-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18] rbh
Glutathione S-transferase n=1 Tax=Rhodovulum sp. PH10 RepID=J5PKG1_9RHOB rbh
Glutathione S-transferase {ECO:0000313|EMBL:EJW11287.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
SCNpilot_cont_750_bf_scaffold_151_6
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5000..5284
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y9D4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EMS43707.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_151_7
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6127..7611)
DNA (1485bp) protein (495aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B; K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
glutamyl-tRNA amidotransferase subunit B n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003059EF7
SCNpilot_cont_750_bf_scaffold_151_8
unknown

Not on your lists

7778..7933
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_151_9
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7945..9423)
DNA (1479bp) protein (493aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P8D0_9BRAD
SCNpilot_cont_750_bf_scaffold_151_10
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9427..9714)
DNA (288bp) protein (96aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Rhodovulum sp. PH10 RepID=J6UE36_9RHOB
glutamyl-tRNA(Gln) amidotransferase subunit C
SCNpilot_cont_750_bf_scaffold_151_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9821..10297
DNA (477bp) protein (159aa)
Holliday junction resolvase YqgF; K07447 putative holliday junction resolvase [EC:3.1.-.-]
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
Putative Holliday junction resolvase n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VDG9_RHOPX
SCNpilot_cont_750_bf_scaffold_151_12
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10362..10733)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6LI39_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW12548.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_151_13
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10885..12522)
DNA (1638bp) protein (546aa)
acyl-CoA dehydrogenase (EC:1.3.99.10); K09456 putative acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ABA05265.1}; EC=1.3.8.4 {ECO:0000313|EMBL:ABA05265.1};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Acyl-CoA dehydrogenase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SR26_NITWN
SCNpilot_cont_750_bf_scaffold_151_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12644..13597
DNA (954bp) protein (318aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
pyrB; aspartate carbamoyltransferase catalytic subunit (EC:2.1.3.2); K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
aspartate carbamoyltransferase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000345F14E
SCNpilot_cont_750_bf_scaffold_151_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13607..14908
DNA (1302bp) protein (434aa)
dihydroorotase; K01465 dihydroorotase [EC:3.5.2.3]
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
Dihydroorotase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07L78_RHOP5
SCNpilot_cont_750_bf_scaffold_151_16
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14905..15486
DNA (582bp) protein (194aa)
putative glycerol-3-phosphate acyltransferase PlsY; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15]
Glycerol-3-phosphate acyltransferase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=PLSY_RHOPS
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_cont_750_bf_scaffold_151_17
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15554..16675
DNA (1122bp) protein (374aa)
DNA protecting protein DprA n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PKD0_9BRAD
DNA protecting protein DprA {ECO:0000313|EMBL:EKS38823.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
DNA processing protein DprA; K04096 DNA processing protein
SCNpilot_cont_750_bf_scaffold_151_18
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16685..17887
DNA (1203bp) protein (401aa)
Lytic murein transglycosylase n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I2G3_9BRAD rbh
Lytic murein transglycosylase {ECO:0000313|EMBL:EJN13186.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
membrane-bound lytic murein transglycosylase B
SCNpilot_cont_750_bf_scaffold_151_19
unknown

Not on your lists

comp(17888..18073)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_151_20
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18358..21165
DNA (2808bp) protein (936aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
DNA topoisomerase I; K03168 DNA topoisomerase I [EC:5.99.1.2]
DNA topoisomerase 1 n=1 Tax=Afipia sp. 1NLS2 RepID=D6VA33_9BRAD
SCNpilot_cont_750_bf_scaffold_151_21
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21228..23636
DNA (2409bp) protein (803aa)
ribonuclease R; K12573 ribonuclease R [EC:3.1.-.-]
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Ribonuclease R n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q215Z4_RHOPB
SCNpilot_cont_750_bf_scaffold_151_22
bacterium YEK0313, Bacteria

Not on your lists

23633..24370
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031B4351
NUDIX domain protein {ECO:0000313|EMBL:CEJ13181.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_151_23
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


24478..24645
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=1 Tax=Rhodovulum sp. PH10 RepID=J6UEL8_9RHOB
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
rpmG; 50S ribosomal protein L33; K02913 large subunit ribosomal protein L33
SCNpilot_cont_750_bf_scaffold_151_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24971..26344)
DNA (1374bp) protein (458aa)
Response regulator receiver modulated diguanylate cyclase n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VCT1_RHOPX
response regulator receiver modulated diguanylate cyclase; K02488 two-component system, cell cycle response regulator
Response regulator receiver modulated diguanylate cyclase {ECO:0000313|EMBL:ADU43886.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_750_bf_scaffold_151_25
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26351..26722)
DNA (372bp) protein (124aa)
Chemotaxis protein CheV n=1 Tax=Rhodovulum sp. PH10 RepID=J6LGF2_9RHOB
Chemotaxis protein CheV {ECO:0000313|EMBL:EJW12068.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
response regulator receiver; K11443 two-component system, cell cycle response regulator DivK
SCNpilot_cont_750_bf_scaffold_151_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26890..27147
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002E2AA43
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIZ46042.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_750_bf_scaffold_151_27
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27158..28414
DNA (1257bp) protein (419aa)
dinP; DNA polymerase IV (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7]
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
DNA polymerase IV n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N548_RHOPA
SCNpilot_cont_750_bf_scaffold_151_28
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28418..29290)
DNA (873bp) protein (291aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q211T2_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD88854.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_750_bf_scaffold_151_29
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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29455..29922
DNA (468bp) protein (156aa)
Endoribonuclease L-PSP n=2 Tax=Oligotropha carboxidovorans RepID=B6JFT8_OLICO
putative endoribonuclease L-PSP
Putative endoribonuclease L-PSP {ECO:0000313|EMBL:AEI06939.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_bf_scaffold_151_30
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30026..30769
DNA (744bp) protein (248aa)
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Rhodovulum sp. PH10 RepID=J6J836_9RHOB
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:EJW12075.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
glycerophosphoryl diester phosphodiesterase
Displaying items 1-30 of 240 in total

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