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SCNpilot_cont_750_bf_scaffold_220

Search features with annotation key words

Displaying items 1-30 of 165 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_220_1
unknown

Not on your lists

250..696
DNA (447bp) protein (149aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_220_2
unknown

Not on your lists

729..1091
DNA (363bp) protein (121aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_220_3
unknown

Not on your lists

comp(1115..1324)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_220_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2608..3645
DNA (1038bp) protein (346aa)
Rare lipoprotein A n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07MN5_RHOP5
rare lipoprotein A; K03642 rare lipoprotein A
Rare lipoprotein A {ECO:0000313|EMBL:ABJ06799.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_750_bf_scaffold_220_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3753..4928
DNA (1176bp) protein (392aa)
Serine-type D-Ala-D-Ala carboxypeptidase; K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Afipia birgiae RepID=UPI0003674F69
Uncharacterized protein {ECO:0000313|EMBL:EKS39888.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_cont_750_bf_scaffold_220_6
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4935..5600
DNA (666bp) protein (222aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
tmk; thymidylate kinase (EC:2.7.4.9); K00943 dTMP kinase [EC:2.7.4.9]
Thymidylate kinase n=1 Tax=Rhodovulum sp. PH10 RepID=J5PNV7_9RHOB
SCNpilot_cont_750_bf_scaffold_220_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5597..6619
DNA (1023bp) protein (341aa)
DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta' [EC:2.7.7.7]
DNA polymerase III, delta prime subunit {ECO:0000313|EMBL:ABD88253.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ABD88253.1};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
DNA polymerase III, delta prime subunit n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q214D3_RHOPB
SCNpilot_cont_750_bf_scaffold_220_8
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6632..8245
DNA (1614bp) protein (538aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
methionyl-tRNA synthetase; K01874 methionyl-tRNA synthetase [EC:6.1.1.10]
Methionine--tRNA ligase n=1 Tax=Rhodovulum sp. PH10 RepID=J6J846_9RHOB rbh
SCNpilot_cont_750_bf_scaffold_220_9
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8245..9051
DNA (807bp) protein (269aa)
TatD-related deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-]
TatD-related deoxyribonuclease n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SSL9_NITWN
TatD-related deoxyribonuclease {ECO:0000313|EMBL:ABA04722.1}; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_750_bf_scaffold_220_10
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9048..9860
DNA (813bp) protein (271aa)
Metal-dependent hydrolase of the beta-lactamase superfamily I protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6J8B9_9RHOB rbh
Metal-dependent hydrolase of the beta-lactamase superfamily I protein {ECO:0000313|EMBL:EJW12120.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein; K06167 PhnP protein
SCNpilot_cont_750_bf_scaffold_220_11
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10198..10737
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLG4_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS31167.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
DNA-binding stress protein; K04047 starvation-inducible DNA-binding protein
SCNpilot_cont_750_bf_scaffold_220_12
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10872..11744
DNA (873bp) protein (291aa)
mazG; nucleoside triphosphate pyrophosphohydrolase; K04765 ATP diphosphatase [EC:3.6.1.8]
Nucleoside triphosphate pyrophosphohydrolase MazG n=1 Tax=Rhodovulum sp. PH10 RepID=J6UES2_9RHOB rbh
Nucleoside triphosphate pyrophosphohydrolase MazG {ECO:0000313|EMBL:EJW12136.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
SCNpilot_cont_750_bf_scaffold_220_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11750..13120)
DNA (1371bp) protein (457aa)
GTP-binding protein HflX n=1 Tax=Afipia birgiae RepID=UPI0003659989
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
GTP-binding proten HflX; K03665 GTP-binding protein HflX
SCNpilot_cont_750_bf_scaffold_220_14
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13121..13378)
DNA (258bp) protein (86aa)
RNA-binding protein Hfq n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6F2_9BRAD
hfq; RNA-binding protein Hfq; K03666 host factor-I protein
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_cont_750_bf_scaffold_220_15
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13614..14471)
DNA (858bp) protein (286aa)
class IV aminotransferase; K00824 D-alanine transaminase [EC:2.6.1.21]
D-amino acid aminotransferase n=1 Tax=Xanthobacteraceae RepID=UPI000365C09C
Aminotransferase class IV {ECO:0000313|EMBL:ADH89082.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_750_bf_scaffold_220_16
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14579..15961)
DNA (1383bp) protein (461aa)
Transcriptional regulator, Fis family n=2 Tax=Bradyrhizobiaceae RepID=F7QN34_9BRAD
Nitrogen assimilation regulatory protein ntrX {ECO:0000313|EMBL:EKS39963.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
ntrX; two component, sigma54 specific, Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX
SCNpilot_cont_750_bf_scaffold_220_17
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16000..18222)
DNA (2223bp) protein (741aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
ntrY; nitrogen regulation protein NtrY (EC:2.7.13.3); K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
Nitrogen regulation protein ntrY n=1 Tax=Rhodovulum sp. PH10 RepID=J6UER8_9RHOB rbh
SCNpilot_cont_750_bf_scaffold_220_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18417..19862)
DNA (1446bp) protein (482aa)
Nitrogen metabolism transcriptional regulator, NtrC, Fis family n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q137C0_RHOPS
Chemotaxis protein CheY {ECO:0000313|EMBL:KIZ41577.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
nitrogen metabolism transcriptional regulator NtrC; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG
SCNpilot_cont_750_bf_scaffold_220_19
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19872..20999)
DNA (1128bp) protein (376aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
signal transduction histidine kinase, nitrogen specific, NtrB; K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
Nitrogen regulation protein NR(II) n=2 Tax=Bradyrhizobiaceae RepID=F7QN37_9BRAD
SCNpilot_cont_750_bf_scaffold_220_20
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20999..22027)
DNA (1029bp) protein (343aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
dus; tRNA-dihydrouridine synthase Dus (EC:1.-.-.-)
tRNA-dihydrouridine synthase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6E6_9BRAD
SCNpilot_cont_750_bf_scaffold_220_21
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22196..23389
DNA (1194bp) protein (398aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
Bifunctional enzyme IspD/IspF {ECO:0000255|HAMAP-Rule:MF_01520}; Includes:; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000255|HAMAP-Rule:MF_01520}; EC=2.7.7.60 {ECO:0000255|HAMAP-Rule:MF_01520};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000255|HAMAP-Rule:MF_01520}; MEP cytidylyltransferase {ECO:0000255|HAMAP-Rule:MF_01520}; Short=MCT {ECO:0000255|HAMAP-Rule:MF_01520};; Includes:; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000255|HAMAP-Rule:MF_01520}; Shor
Bifunctional enzyme IspD/IspF n=2 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=ISPDF_NITHX
SCNpilot_cont_750_bf_scaffold_220_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23402..23926
DNA (525bp) protein (175aa)
CinA domain protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VK95_RHOPX
cinA; competence damage-inducible protein A; K03743
CinA domain protein {ECO:0000313|EMBL:ADU44465.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_750_bf_scaffold_220_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23935..24396)
DNA (462bp) protein (154aa)
cyclase n=1 Tax=Xanthobacteraceae RepID=UPI00036E3241
Uncharacterized protein {ECO:0000313|EMBL:EKS39856.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
cyclase/dehydrase
SCNpilot_cont_750_bf_scaffold_220_24
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24403..25362)
DNA (960bp) protein (320aa)
lipoyl synthase; K03644 lipoic acid synthetase [EC:2.8.1.8]
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
radical SAM protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000315F109
SCNpilot_cont_750_bf_scaffold_220_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25424..25702)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBL9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38134.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
transglycosylase-associated protein
SCNpilot_cont_750_bf_scaffold_220_26
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25713..27146)
DNA (1434bp) protein (478aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
Dihydrolipoyl dehydrogenase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WZJ5_9BRAD
SCNpilot_cont_750_bf_scaffold_220_27
unknown

Not on your lists

comp(27191..27595)
DNA (405bp) protein (135aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_220_28
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27632..28981)
DNA (1350bp) protein (450aa)
dihydrolipoamide acetyltransferase; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
Dihydrolipoamide acetyltransferase n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D9A3_BRAJP
SCNpilot_cont_750_bf_scaffold_220_29
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28990..30378)
DNA (1389bp) protein (463aa)
Pyruvate dehydrogenase E1 component, beta subunit n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z7L0_9BRAD
pyruvate dehydrogenase E1 component, beta subunit
Pyruvate dehydrogenase E1 component, beta subunit {ECO:0000313|EMBL:BAM89544.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_cont_750_bf_scaffold_220_30
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30384..31430)
DNA (1047bp) protein (349aa)
pdhA; pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000313|EMBL:AEI06461.1}; EC=1.2.4.1 {ECO:0000313|EMBL:AEI06461.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Pyruvate dehydrogenase (Acetyl-transferring) E1 component, alpha subunit n=2 Tax=Oligotropha carboxidovorans RepID=B6JFX6_OLICO
Displaying items 1-30 of 165 in total

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