name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_cont_750_bf_scaffold_220_1
unknown
|
Not on your lists |
250..696
|
This feature has no annotations |
|
SCNpilot_cont_750_bf_scaffold_220_2
unknown
|
Not on your lists |
729..1091
|
This feature has no annotations |
|
SCNpilot_cont_750_bf_scaffold_220_3
unknown
|
Not on your lists |
comp(1115..1324)
|
This feature has no annotations |
|
SCNpilot_cont_750_bf_scaffold_220_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2608..3645
|
Rare lipoprotein A n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07MN5_RHOP5
rare lipoprotein A; K03642 rare lipoprotein A
Rare lipoprotein A {ECO:0000313|EMBL:ABJ06799.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
|
|
SCNpilot_cont_750_bf_scaffold_220_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3753..4928
|
Serine-type D-Ala-D-Ala carboxypeptidase; K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Afipia birgiae RepID=UPI0003674F69
Uncharacterized protein {ECO:0000313|EMBL:EKS39888.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
|
|
SCNpilot_cont_750_bf_scaffold_220_6
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4935..5600
|
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
Thymidylate kinase n=1 Tax=Rhodovulum sp. PH10 RepID=J5PNV7_9RHOB
|
|
SCNpilot_cont_750_bf_scaffold_220_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5597..6619
|
DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta' [EC:2.7.7.7]
DNA polymerase III, delta prime subunit {ECO:0000313|EMBL:ABD88253.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ABD88253.1};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
DNA polymerase III, delta prime subunit n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q214D3_RHOPB
|
|
SCNpilot_cont_750_bf_scaffold_220_8
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6632..8245
|
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
methionyl-tRNA synthetase; K01874 methionyl-tRNA synthetase [EC:6.1.1.10]
Methionine--tRNA ligase n=1 Tax=Rhodovulum sp. PH10 RepID=J6J846_9RHOB
rbh
|
|
SCNpilot_cont_750_bf_scaffold_220_9
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8245..9051
|
TatD-related deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-]
TatD-related deoxyribonuclease n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SSL9_NITWN
TatD-related deoxyribonuclease {ECO:0000313|EMBL:ABA04722.1}; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
|
|
SCNpilot_cont_750_bf_scaffold_220_10
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9048..9860
|
Metal-dependent hydrolase of the beta-lactamase superfamily I protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6J8B9_9RHOB
rbh
Metal-dependent hydrolase of the beta-lactamase superfamily I protein {ECO:0000313|EMBL:EJW12120.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein; K06167 PhnP protein
|
|
SCNpilot_cont_750_bf_scaffold_220_11
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10198..10737
|
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLG4_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS31167.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
DNA-binding stress protein; K04047 starvation-inducible DNA-binding protein
|
|
SCNpilot_cont_750_bf_scaffold_220_12
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10872..11744
|
mazG; nucleoside triphosphate pyrophosphohydrolase; K04765 ATP diphosphatase [EC:3.6.1.8]
Nucleoside triphosphate pyrophosphohydrolase MazG n=1 Tax=Rhodovulum sp. PH10 RepID=J6UES2_9RHOB
rbh
Nucleoside triphosphate pyrophosphohydrolase MazG {ECO:0000313|EMBL:EJW12136.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
|
|
SCNpilot_cont_750_bf_scaffold_220_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11750..13120)
|
GTP-binding protein HflX n=1 Tax=Afipia birgiae RepID=UPI0003659989
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
GTP-binding proten HflX; K03665 GTP-binding protein HflX
|
|
SCNpilot_cont_750_bf_scaffold_220_14
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13121..13378)
|
RNA-binding protein Hfq n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6F2_9BRAD
hfq; RNA-binding protein Hfq; K03666 host factor-I protein
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
|
|
SCNpilot_cont_750_bf_scaffold_220_15
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13614..14471)
|
class IV aminotransferase; K00824 D-alanine transaminase [EC:2.6.1.21]
D-amino acid aminotransferase n=1 Tax=Xanthobacteraceae RepID=UPI000365C09C
Aminotransferase class IV {ECO:0000313|EMBL:ADH89082.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
|
|
SCNpilot_cont_750_bf_scaffold_220_16
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14579..15961)
|
Transcriptional regulator, Fis family n=2 Tax=Bradyrhizobiaceae RepID=F7QN34_9BRAD
Nitrogen assimilation regulatory protein ntrX {ECO:0000313|EMBL:EKS39963.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
ntrX; two component, sigma54 specific, Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX
|
|
SCNpilot_cont_750_bf_scaffold_220_17
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16000..18222)
|
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
ntrY; nitrogen regulation protein NtrY (EC:2.7.13.3); K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
Nitrogen regulation protein ntrY n=1 Tax=Rhodovulum sp. PH10 RepID=J6UER8_9RHOB
rbh
|
|
SCNpilot_cont_750_bf_scaffold_220_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18417..19862)
|
Nitrogen metabolism transcriptional regulator, NtrC, Fis family n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q137C0_RHOPS
Chemotaxis protein CheY {ECO:0000313|EMBL:KIZ41577.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
nitrogen metabolism transcriptional regulator NtrC; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG
|
|
SCNpilot_cont_750_bf_scaffold_220_19
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19872..20999)
|
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
signal transduction histidine kinase, nitrogen specific, NtrB; K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
Nitrogen regulation protein NR(II) n=2 Tax=Bradyrhizobiaceae RepID=F7QN37_9BRAD
|
|
SCNpilot_cont_750_bf_scaffold_220_20
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20999..22027)
|
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
dus; tRNA-dihydrouridine synthase Dus (EC:1.-.-.-)
tRNA-dihydrouridine synthase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6E6_9BRAD
|
|
SCNpilot_cont_750_bf_scaffold_220_21
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22196..23389
|
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
Bifunctional enzyme IspD/IspF {ECO:0000255|HAMAP-Rule:MF_01520}; Includes:; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000255|HAMAP-Rule:MF_01520}; EC=2.7.7.60 {ECO:0000255|HAMAP-Rule:MF_01520};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000255|HAMAP-Rule:MF_01520}; MEP cytidylyltransferase {ECO:0000255|HAMAP-Rule:MF_01520}; Short=MCT {ECO:0000255|HAMAP-Rule:MF_01520};; Includes:; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000255|HAMAP-Rule:MF_01520}; Shor
Bifunctional enzyme IspD/IspF n=2 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=ISPDF_NITHX
|
|
SCNpilot_cont_750_bf_scaffold_220_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23402..23926
|
CinA domain protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VK95_RHOPX
cinA; competence damage-inducible protein A; K03743
CinA domain protein {ECO:0000313|EMBL:ADU44465.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
|
|
SCNpilot_cont_750_bf_scaffold_220_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23935..24396)
|
cyclase n=1 Tax=Xanthobacteraceae RepID=UPI00036E3241
Uncharacterized protein {ECO:0000313|EMBL:EKS39856.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
cyclase/dehydrase
|
|
SCNpilot_cont_750_bf_scaffold_220_24
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24403..25362)
|
lipoyl synthase; K03644 lipoic acid synthetase [EC:2.8.1.8]
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
radical SAM protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000315F109
|
|
SCNpilot_cont_750_bf_scaffold_220_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(25424..25702)
|
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBL9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38134.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
transglycosylase-associated protein
|
|
SCNpilot_cont_750_bf_scaffold_220_26
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(25713..27146)
|
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
Dihydrolipoyl dehydrogenase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WZJ5_9BRAD
|
|
SCNpilot_cont_750_bf_scaffold_220_27
unknown
|
Not on your lists |
comp(27191..27595)
|
This feature has no annotations |
|
SCNpilot_cont_750_bf_scaffold_220_28
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27632..28981)
|
dihydrolipoamide acetyltransferase; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
Dihydrolipoamide acetyltransferase n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D9A3_BRAJP
|
|
SCNpilot_cont_750_bf_scaffold_220_29
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(28990..30378)
|
Pyruvate dehydrogenase E1 component, beta subunit n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z7L0_9BRAD
pyruvate dehydrogenase E1 component, beta subunit
Pyruvate dehydrogenase E1 component, beta subunit {ECO:0000313|EMBL:BAM89544.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
|
|
SCNpilot_cont_750_bf_scaffold_220_30
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(30384..31430)
|
pdhA; pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000313|EMBL:AEI06461.1}; EC=1.2.4.1 {ECO:0000313|EMBL:AEI06461.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Pyruvate dehydrogenase (Acetyl-transferring) E1 component, alpha subunit n=2 Tax=Oligotropha carboxidovorans RepID=B6JFX6_OLICO
|