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SCNpilot_cont_750_bf_scaffold_516

Search features with annotation key words

Displaying items 1-30 of 97 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_516_1
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

182..505
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B763DD
Uncharacterized protein {ECO:0000313|EMBL:KJC39518.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_516_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

502..795
DNA (294bp) protein (98aa)
Helix-turn-helix domain protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VQE3_RHOPX
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ADU44933.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_750_bf_scaffold_516_3
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1341..2984
DNA (1644bp) protein (548aa)
fumA; class I fumarate hydratase (EC:4.2.1.2); K01676 fumarate hydratase, class I [EC:4.2.1.2] rbh
Aerobic fumarate hydratase class 1 n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QPN8_9BRAD rbh
Fumarate hydratase {ECO:0000313|EMBL:ETR75806.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_cont_750_bf_scaffold_516_4
Acinetobacter sp. ANC 3929, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3169..4119
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Acinetobacter sp. ANC 3929 RepID=N9KCQ0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ENW81738.1}; TaxID=1217707 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter sp. ANC 3929.;"
putative hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
SCNpilot_cont_750_bf_scaffold_516_5
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4631..5977
DNA (1347bp) protein (449aa)
branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002DC7DEB rbh
Bradyrhizobium elkanii strain UASWS1015 Contig172, whole genome shotgun sequence {ECO:0000313|EMBL:KIU49805.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
twin-arginine translocation pathway signal
SCNpilot_cont_750_bf_scaffold_516_6
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6133..7008
DNA (876bp) protein (292aa)
Amino acid/amide ABC transporter membrane protein 1, HAAT family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJL6_NITHX
inner-membrane translocator
Amino acid/amide ABC transporter membrane protein 1, HAAT family {ECO:0000313|EMBL:ABE63581.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_516_7
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7015..8856
DNA (1842bp) protein (614aa)
branched-chain amino acid ABC transporter ATPase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036592BC rbh
Bradyrhizobium elkanii strain UASWS1015 Contig172, whole genome shotgun sequence {ECO:0000313|EMBL:KIU49807.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
ABC transporter
SCNpilot_cont_750_bf_scaffold_516_8
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8853..9551
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DDE8_BRAJP
hypothetical protein; K01996 branched-chain amino acid transport system ATP-binding protein
Uncharacterized protein {ECO:0000313|EMBL:BAL05535.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_750_bf_scaffold_516_9
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9687..10424
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HIQ8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF84688.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
LamB/YcsF family protein; K07160 UPF0271 protein
SCNpilot_cont_750_bf_scaffold_516_10
unknown

Not on your lists

comp(10421..10666)
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_516_11
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10809..12419)
DNA (1611bp) protein (537aa)
N-acyl-D-amino-acid deacylase; K06015 N-acyl-D-amino-acid deacylase [EC:3.5.1.81]
N-acyl-D-amino-acid deacylase id=4884113 bin=GWC2_Methylomirabilis_70_24 species=Thermotoga thermarum genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCNpilot_cont_750_bf_scaffold_516_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12443..13435)
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S6S7_9BURK
bug; ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCNpilot_cont_750_bf_scaffold_516_13
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13575..14558
DNA (984bp) protein (328aa)
Tat pathway signal sequence domain-containing protein 9 n=1 Tax=Achromobacter piechaudii HLE RepID=J4J7G5_9BURK rbh
Tat pathway signal sequence domain-containing protein 9 {ECO:0000313|EMBL:EJO30639.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
Tat pathway signal sequence domain-containing protein 9 rbh
SCNpilot_cont_750_bf_scaffold_516_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14771..15169
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I2Z6_RHOVT
Uncharacterized protein {ECO:0000313|EMBL:KIZ40153.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_516_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15177..15764)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Sulfobacillus thermosulfidooxidans RepID=UPI000374804B
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
SCNpilot_cont_750_bf_scaffold_516_16
unknown

Not on your lists

comp(15967..16101)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_516_17
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16115..17518)
DNA (1404bp) protein (468aa)
Major facilitator superfamily MFS_1 n=1 Tax=Afipia sp. 1NLS2 RepID=D6VB24_9BRAD
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EFI49950.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_516_18
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17655..18551)
DNA (897bp) protein (299aa)
Transcriptional regulator, LysR family n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8I9Q0_METNO
LysR family transcriptional regulator
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_cont_750_bf_scaffold_516_19
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

18791..19786
DNA (996bp) protein (332aa)
esterase; K01432 arylformamidase [EC:3.5.1.9]
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002D6B735 rbh
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
SCNpilot_cont_750_bf_scaffold_516_20
unknown

Not on your lists

comp(19805..19996)
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_516_21
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20184..20540
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UFG4_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW12461.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
SCNpilot_cont_750_bf_scaffold_516_22
unknown

Not on your lists

comp(20677..20988)
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_516_23
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


21326..22414
DNA (1089bp) protein (363aa)
Protein RecA n=88 Tax=Bradyrhizobium RepID=H0RS76_9BRAD
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
recA; recombinase A; K03553 recombination protein RecA
SCNpilot_cont_750_bf_scaffold_516_24
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23258..23563
DNA (306bp) protein (102aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
alanyl-tRNA synthetase n=1 Tax=Xanthobacteraceae RepID=UPI000375AEC6
Suspect SCG annotation. See neighboring gene [SCNpilot_cont_750_bf_scaffold_516_25].
SCNpilot_cont_750_bf_scaffold_516_25
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


23659..25899
DNA (2241bp) protein (747aa)
Alanine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00036}; EC=6.1.1.7 {ECO:0000255|HAMAP-Rule:MF_00036};; Alanyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00036}; Short=AlaRS {ECO:0000255|HAMAP-Rule:MF_00036};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
alaS; alanyl-tRNA synthetase; K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
Alanine--tRNA ligase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=SYA_RHOP2
SCNpilot_cont_750_bf_scaffold_516_26
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26115..26720
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TYZ3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP62557.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
pyridoxamine 5'-phosphate oxidase-like FMN-binding protein; K07006
SCNpilot_cont_750_bf_scaffold_516_27
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26772..27059)
DNA (288bp) protein (96aa)
Transglycosylase-associated protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QAF2_RHOPT
transglycosylase-associated protein
Transglycosylase-associated protein {ECO:0000313|EMBL:ACE99038.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_cont_750_bf_scaffold_516_28
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27116..27790)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NWT7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33641.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_516_29
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28006..28371
DNA (366bp) protein (122aa)
Preprotein translocase subunit SecY n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IN52_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ETR75229.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_516_30
Bartonella tamiae, Bartonella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28444..29655)
DNA (1212bp) protein (404aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=1094558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella.;" source="Bartonella tamiae Th239.;"
isocitrate dehydrogenase; K00031 isocitrate dehydrogenase [EC:1.1.1.42]
Isocitrate dehydrogenase [NADP] n=2 Tax=Bartonella tamiae RepID=J0ZKQ4_9RHIZ
Displaying items 1-30 of 97 in total

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