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SCNpilot_cont_750_bf_scaffold_357

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Displaying items 1-30 of 59 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_357_1
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..250)
DNA (249bp) protein (83aa)
ycsA; tartrate dehydrogenase; K07246 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Putative 3-isopropylmalate dehydrogenase {ECO:0000313|EMBL:CCF00647.1}; EC=1.1.1.83 {ECO:0000313|EMBL:CCF00647.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
Tartrate dehydrogenase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AHW5_RHIFH
SCNpilot_cont_750_bf_scaffold_357_2
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(293..1663)
DNA (1371bp) protein (457aa)
Biotin carboxylase {ECO:0000313|EMBL:GAJ37527.1}; EC=6.3.4.14 {ECO:0000313|EMBL:GAJ37527.1};; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
Biotin carboxylase of acetyl-CoA carboxylase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GW05_9PROT
accC; biotin carboxylase
SCNpilot_cont_750_bf_scaffold_357_3
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1670..1906)
DNA (237bp) protein (79aa)
Acetyl-CoA carboxylase Biotin carboxyl carrier subunit n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RQ42_9BRAD
Biotin carboxyl carrier protein of acetyl-CoA carboxylase {ECO:0000313|EMBL:GAJ37526.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_357_4
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1929..2903)
DNA (975bp) protein (325aa)
hypothetical protein; K01941 urea carboxylase [EC:6.3.4.6]
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI000361DBE3 rbh
Urea amidolyase {ECO:0000313|EMBL:GAJ37525.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
SCNpilot_cont_750_bf_scaffold_357_5
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2900..3778)
DNA (879bp) protein (293aa)
urea carboxylase (EC:6.3.4.6)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI00036D590C rbh
Urea amidolyase {ECO:0000313|EMBL:GAJ37524.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
SCNpilot_cont_750_bf_scaffold_357_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3797..5182)
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EX58_9RHIZ rbh
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000313|EMBL:EYR78357.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
class III aminotransferase rbh
SCNpilot_cont_750_bf_scaffold_357_7
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5195..6214)
DNA (1020bp) protein (340aa)
Methyl-galactoside transport system permease protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NZE1_AZOS1
Ribose transport system permease protein rbsC {ECO:0000313|EMBL:GAJ37522.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
mglC; methyl-galactoside transport system permease protein; K10440 ribose transport system permease protein
SCNpilot_cont_750_bf_scaffold_357_8
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6211..7746)
DNA (1536bp) protein (512aa)
putative ABC-type monosaccharide transport system, ATPase component (EC:3.6.3.17) rbh
Putative ABC-type monosaccharide transport system, ATPase component n=5 Tax=Vibrio nigripulchritudo RepID=U4DES8_9VIBR rbh
Ribose transport ATP-binding protein rbsA {ECO:0000313|EMBL:GAJ37521.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
SCNpilot_cont_750_bf_scaffold_357_9
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7743..8819)
DNA (1077bp) protein (359aa)
Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EEL3_BRASB
Periplasmic protein torT {ECO:0000313|EMBL:GAJ37520.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
TMAO reductase system periplasmic protein TorT; K11930 periplasmic protein TorT
SCNpilot_cont_750_bf_scaffold_357_10
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8879..9604)
DNA (726bp) protein (242aa)
LamB/YcsF family protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDE6_MESCW rbh
Hypothetical UPF0271 protein Atu3910/AGR_L_1871 {ECO:0000313|EMBL:GAJ37519.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
LamB/YcsF family protein; K07160 UPF0271 protein rbh
SCNpilot_cont_750_bf_scaffold_357_11
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9724..10401
DNA (678bp) protein (226aa)
Transcriptional regulator, GntR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D053_9RHIZ rbh
Hypothetical transcriptional regulator yncC {ECO:0000313|EMBL:GAJ37518.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
transcriptional regulator GntR
SCNpilot_cont_750_bf_scaffold_357_12
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10414..11379)
DNA (966bp) protein (322aa)
Cobalamin synthesis protein, P47K n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) RepID=A3PQG4_RHOS1 rbh
cobalamin synthesis protein, P47K rbh
Cobalamin synthesis protein, P47K {ECO:0000313|EMBL:ABN78580.1}; TaxID=349101 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9).;"
SCNpilot_cont_750_bf_scaffold_357_13
Rhodobacter sp. AKP1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11372..11665)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. AKP1 RepID=L1K559_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EKX55941.1}; TaxID=1247725 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. AKP1.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_357_14
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11669..12571)
DNA (903bp) protein (301aa)
Polysaccharide deacetylase n=1 Tax=Rhodobacter sphaeroides WS8N RepID=F3U397_RHOSH rbh
Polysaccharide deacetylase rbh
Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence {ECO:0000313|EMBL:ABA81416.1}; TaxID=272943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM; 158).;"
SCNpilot_cont_750_bf_scaffold_357_15
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12621..13376)
DNA (756bp) protein (252aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NTX0_9RHOB
Oxidoreductase {ECO:0000313|EMBL:KJB94397.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
SCNpilot_cont_750_bf_scaffold_357_16
Streptomyces iranensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13455..14423)
DNA (969bp) protein (323aa)
Putative transporter protein n=1 Tax=Mycobacterium leprae (strain Br4923) RepID=B8ZUE4_MYCLB
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:CDR04533.1}; TaxID=576784 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces iranensis.;"
transporter protein
SCNpilot_cont_750_bf_scaffold_357_17
Streptomyces iranensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14436..15950)
DNA (1515bp) protein (505aa)
D-ribose ABC transporter ATP-binding protein; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
Ribose import ATP-binding protein RbsA 1 n=1 Tax=Streptomyces himastatinicus ATCC 53653 RepID=D9WQ32_9ACTO
ABC transporter related protein {ECO:0000313|EMBL:CDR04536.1}; TaxID=576784 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces iranensis.;"
SCNpilot_cont_750_bf_scaffold_357_18
Streptomyces iranensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16015..17073)
DNA (1059bp) protein (353aa)
Putative D-ribose-binding protein n=1 Tax=Clostridium sp. D5 RepID=F0YUE2_9CLOT
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:CDR04531.1}; TaxID=576784 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces iranensis.;"
D-ribose-binding protein
SCNpilot_cont_750_bf_scaffold_357_19
Prauserella sp. Am3, Prauserella, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17431..18480
DNA (1050bp) protein (350aa)
LacI family transcriptional regulator n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI00035CD338 rbh
Transcriptional regulator, LacI family {ECO:0000313|EMBL:KID28482.1}; TaxID=1515610 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Prauserella.;" source="Prauserella sp. Am3.;"
LacI family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_357_20
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18564..19541
DNA (978bp) protein (326aa)
putative L-asparaginase type II; K01424 L-asparaginase [EC:3.5.1.1]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000374BEDD rbh
L-asparaginase {ECO:0000313|EMBL:GAK71910.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
SCNpilot_cont_750_bf_scaffold_357_21
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19665..20120)
DNA (456bp) protein (152aa)
Transposase n=1 Tax=alpha proteobacterium JLT2015 RepID=M2TAI5_9PROT
Transposase, IS4 {ECO:0000313|EMBL:KGB51471.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
putative transposase
SCNpilot_cont_750_bf_scaffold_357_22
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(20267..21343)
DNA (1077bp) protein (359aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
phenylalanyl-tRNA synthetase subunit alpha n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E813C3
SCNpilot_cont_750_bf_scaffold_357_23
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21347..22819)
DNA (1473bp) protein (491aa)
BFD domain protein (2Fe-2S)-binding domain protein n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WEE1_VEREI rbh
BFD/(2Fe-2S)-binding domain-containing protein rbh
BFD domain protein (2Fe-2S)-binding domain protein {ECO:0000313|EMBL:ABM55998.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_cont_750_bf_scaffold_357_24
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22812..23159)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WEE0_VEREI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM55997.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_cont_750_bf_scaffold_357_25
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23140..24273)
DNA (1134bp) protein (378aa)
Glycine/D-amino acid oxidase, deaminating n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z0I5_9RHIZ rbh
Glycine/D-amino acid oxidase, deaminating {ECO:0000313|EMBL:EIM29727.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
FAD dependent oxidoreductase rbh
SCNpilot_cont_750_bf_scaffold_357_26
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24390..25754)
DNA (1365bp) protein (455aa)
amidase (EC:3.5.1.4); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
Putative amidase n=1 Tax=Bordetella bronchiseptica 1289 RepID=K4TS50_BORBO
Putative amidase {ECO:0000313|EMBL:CCN22955.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
SCNpilot_cont_750_bf_scaffold_357_27
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25812..26561)
DNA (750bp) protein (250aa)
ABC transporter; K09972 general L-amino acid transport system ATP-binding protein [EC:3.6.3.-]
General L-amino acid ABC transporter ATP-binding protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11JB3_MESSB
General L-amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:ABG62512.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_750_bf_scaffold_357_28
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26566..27228)
DNA (663bp) protein (221aa)
ABC transporter n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031B9590
Polar amino acid ABC transporter permease {ECO:0000313|EMBL:EIM74068.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
polar amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein
SCNpilot_cont_750_bf_scaffold_357_29
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27218..27877)
DNA (660bp) protein (220aa)
ABC transporter n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BWW7_9RHIZ rbh
ABC transporter {ECO:0000313|EMBL:EIM74069.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
putative amino acid permease
SCNpilot_cont_750_bf_scaffold_357_30
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27874..28758)
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031AF8A5
Amino acid ABC transporte {ECO:0000313|EMBL:EIM74070.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
Amino acid/amide ABC transporter substrate-binding protein
Displaying items 1-30 of 59 in total

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