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SCNpilot_cont_750_bf_scaffold_387

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_387_1
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(181..522)
DNA (342bp) protein (114aa)
transposase n=1 Tax=Rhizobium leguminosarum RepID=UPI00035D2E50
putative transposase; K07492 putative transposase
Putative transposase {ECO:0000313|EMBL:CAK10392.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_cont_750_bf_scaffold_387_2
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(564..941)
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036BD9C7
putative transposase
Putative transposase {ECO:0000313|EMBL:CAK10391.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_cont_750_bf_scaffold_387_3
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(958..2415)
DNA (1458bp) protein (486aa)
dihydropyrimidinase; K01464 dihydropyrimidinase [EC:3.5.2.2] rbh
Dihydropyrimidinase {ECO:0000313|EMBL:ABR61812.1}; EC=3.5.2.2 {ECO:0000313|EMBL:ABR61812.1};; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
dihydropyrimidinase n=1 Tax=Sinorhizobium medicae RepID=UPI000374766F rbh
SCNpilot_cont_750_bf_scaffold_387_4
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2437..3714)
DNA (1278bp) protein (426aa)
Cysteine desulfurase family protein {ECO:0000313|EMBL:ABR61811.1}; EC=2.8.1.7 {ECO:0000313|EMBL:ABR61811.1};; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
Cysteine desulfurase family protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UDT1_SINMW rbh
cysteine desulfurase rbh
SCNpilot_cont_750_bf_scaffold_387_5
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3739..4476)
DNA (738bp) protein (246aa)
ABC transporter related n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UDT0_SINMW rbh
ABC transporter-like protein rbh
ABC transporter related {ECO:0000313|EMBL:ABR61810.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_cont_750_bf_scaffold_387_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4476..5147)
DNA (672bp) protein (224aa)
Polar amino acid ABC transporter inner membrane subunit n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q5R3_9RHIZ rbh
Strain MEJ076 contig_21, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ00284.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
polar amino acid ABC transporter inner membrane subunit; K02029 polar amino acid transport system permease protein rbh
SCNpilot_cont_750_bf_scaffold_387_7
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5201..6043)
DNA (843bp) protein (281aa)
Extracellular solute-binding protein family 3 n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UDS8_SINMW rbh
extracellular solute-binding protein; K02030 polar amino acid transport system substrate-binding protein rbh
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:ABR61808.1}; Flags: Precursor;; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_cont_750_bf_scaffold_387_8
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6157..6846
DNA (690bp) protein (230aa)
GntR domain protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UDS7_SINMW rbh
GntR family transcriptional regulator; K05799 GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex rbh
GntR domain protein {ECO:0000313|EMBL:ABR61807.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_cont_750_bf_scaffold_387_9
unknown

Not on your lists

7033..7143
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_387_10
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7497..8633)
DNA (1137bp) protein (379aa)
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BB30_PARDP rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABL72724.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_cont_750_bf_scaffold_387_11
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8655..9461)
DNA (807bp) protein (269aa)
shikimate dehydrogenase (EC:1.1.1.25); K00014 shikimate dehydrogenase [EC:1.1.1.25] rbh
Shikimate dehydrogenase {ECO:0000313|EMBL:ABL72725.1}; EC=1.1.1.25 {ECO:0000313|EMBL:ABL72725.1};; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
Shikimate dehydrogenase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BB31_PARDP rbh
SCNpilot_cont_750_bf_scaffold_387_12
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9458..11032)
DNA (1575bp) protein (525aa)
aldehyde dehydrogenase; K14519 NADP-dependent aldehyde dehydrogenase [EC:1.2.1.4] rbh
2,5-dioxopentanoate dehydrogenase {ECO:0000313|EMBL:ABL72726.1}; EC=1.2.1.26 {ECO:0000313|EMBL:ABL72726.1};; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
2,5-dioxopentanoate dehydrogenase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BB32_PARDP rbh
SCNpilot_cont_750_bf_scaffold_387_13
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11034..11963)
DNA (930bp) protein (310aa)
2-dehydro-3-deoxy-L-arabinonate dehydratase {ECO:0000313|EMBL:ABL72727.1}; EC=4.2.1.43 {ECO:0000313|EMBL:ABL72727.1};; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
2-dehydro-3-deoxy-L-arabinonate dehydratase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BB33_PARDP rbh
dihydrodipicolinate synthetase rbh
SCNpilot_cont_750_bf_scaffold_387_14
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12031..12840)
DNA (810bp) protein (270aa)
Amino acid ABC transporter substrate-binding protein, PAAT family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BB34_PARDP rbh
extracellular solute-binding protein rbh
Amino acid ABC transporter substrate-binding protein, PAAT family {ECO:0000313|EMBL:ABL72728.1}; Flags: Precursor;; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_cont_750_bf_scaffold_387_15
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12867..13607)
DNA (741bp) protein (247aa)
ABC transporter related; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21] rbh
Amino acid ABC transporter ATP-binding protein, PAAT family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BB35_PARDP rbh
Amino acid ABC transporter ATP-binding protein, PAAT family {ECO:0000313|EMBL:ABL72729.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_cont_750_bf_scaffold_387_16
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13661..14305)
DNA (645bp) protein (215aa)
Amino acid ABC transporter membrane protein 2, PAAT family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BB36_PARDP rbh
polar amino acid ABC transporter, inner membrane subunit; K02029 polar amino acid transport system permease protein rbh
Amino acid ABC transporter membrane protein 2, PAAT family {ECO:0000313|EMBL:ABL72730.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_cont_750_bf_scaffold_387_17
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14315..14995)
DNA (681bp) protein (227aa)
Amino acid ABC transporter membrane protein 1, PAAT family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BB37_PARDP rbh
polar amino acid ABC transporter, inner membrane subunit; K02029 polar amino acid transport system permease protein rbh
Amino acid ABC transporter membrane protein 1, PAAT family {ECO:0000313|EMBL:ABL72731.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_cont_750_bf_scaffold_387_18
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15198..16739
DNA (1542bp) protein (514aa)
altronate dehydratase (EC:4.2.1.7); K01685 altronate hydrolase [EC:4.2.1.7] rbh
Altronate dehydratase {ECO:0000313|EMBL:ABL72732.1}; EC=4.2.1.7 {ECO:0000313|EMBL:ABL72732.1};; Flags: Precursor;; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
Altronate dehydratase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BB38_PARDP rbh
SCNpilot_cont_750_bf_scaffold_387_19
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16715..17746
DNA (1032bp) protein (344aa)
Transcriptional regulator, GntR family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BB39_PARDP rbh
GntR family transcriptional regulator rbh
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABL72733.1}; Flags: Precursor;; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_cont_750_bf_scaffold_387_20
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17872..19158)
DNA (1287bp) protein (429aa)
fuconate dehydratase n=1 Tax=Ochrobactrum anthropi RepID=UPI000287C539 rbh
Fuconate dehydratase {ECO:0000313|EMBL:EXL07339.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
mandelate racemase/muconate lactonizing protein rbh
SCNpilot_cont_750_bf_scaffold_387_21
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19230..20075)
DNA (846bp) protein (282aa)
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase n=1 Tax=Ochrobactrum anthropi RepID=UPI000288027F rbh
5-carboxymethyl-2-hydroxymuconate delta-isomerase rbh
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase {ECO:0000313|EMBL:EXL07340.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
SCNpilot_cont_750_bf_scaffold_387_22
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20112..20846)
DNA (735bp) protein (245aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6WVP4_OCHA4 rbh
short-chain dehydrogenase/reductase SDR rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABS13048.1}; Flags: Precursor;; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_750_bf_scaffold_387_23
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20943..21875)
DNA (933bp) protein (311aa)
gluconolactonase; K01053 gluconolactonase [EC:3.1.1.17] rbh
Gluconolactonase {ECO:0000313|EMBL:ABS16618.1}; EC=3.1.1.17 {ECO:0000313|EMBL:ABS16618.1};; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
Gluconolactonase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X5W4_OCHA4 rbh
SCNpilot_cont_750_bf_scaffold_387_24
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21897..22844)
DNA (948bp) protein (316aa)
ABC transporter permease n=1 Tax=Ochrobactrum anthropi RepID=UPI000289C4A5 rbh
inner-membrane translocator; K02057 simple sugar transport system permease protein rbh
ABC transporter permease {ECO:0000313|EMBL:EXL04708.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
SCNpilot_cont_750_bf_scaffold_387_25
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22841..23785)
DNA (945bp) protein (315aa)
ABC transporter permease n=1 Tax=Ochrobactrum anthropi RepID=UPI000289C051 rbh
ABC transporter permease {ECO:0000313|EMBL:EXL04707.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein rbh
SCNpilot_cont_750_bf_scaffold_387_26
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23785..25245)
DNA (1461bp) protein (487aa)
ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17] rbh
ABC transporter related n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X5W1_OCHA4 rbh
ABC transporter related {ECO:0000313|EMBL:ABS16615.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_750_bf_scaffold_387_27
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25342..26358)
DNA (1017bp) protein (339aa)
Putative simple sugar transport system substrate-binding protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X5W0_OCHA4 rbh
putative simple sugar transport system substrate-binding protein; K02058 simple sugar transport system substrate-binding protein rbh
Putative simple sugar transport system substrate-binding protein {ECO:0000313|EMBL:ABS16614.1}; Flags: Precursor;; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_750_bf_scaffold_387_28
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26675..27913
DNA (1239bp) protein (413aa)
ATPase n=1 Tax=Ochrobactrum anthropi RepID=UPI0002894B8C rbh
GAF sensor signal transduction histidine kinase rbh
GAF sensor signal transduction histidine kinase {ECO:0000313|EMBL:ABS16613.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_750_bf_scaffold_387_29
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27915..28688
DNA (774bp) protein (258aa)
Two component LuxR family transcriptional regulator n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KAQ6_9RHIZ rbh
Two component LuxR family transcriptional regulator {ECO:0000313|EMBL:EMG52275.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
two component LuxR family transcriptional regulator rbh
SCNpilot_cont_750_bf_scaffold_387_30
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30036..30638)
DNA (603bp) protein (201aa)
transposase IS4 n=1 Tax=Sphingomonas melonis RepID=UPI000363F81A
Transposase {ECO:0000313|EMBL:EXL04994.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
transposase
Displaying items 1-30 of 57 in total

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