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SCNpilot_cont_750_bf_scaffold_6940

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_6940_1
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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2..430
DNA (429bp) protein (143aa)
3'-5' exonuclease; K03684 ribonuclease D [EC:3.1.13.5]
3''''-5'''' exonuclease n=1 Tax=Hirschia maritima RepID=UPI00035C1801
Ribonuclease D related protein {ECO:0000313|EMBL:CDO59944.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
SCNpilot_cont_750_bf_scaffold_6940_2
Loktanella hongkongensis, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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773..1783
DNA (1011bp) protein (337aa)
Arabinose 5-phosphate isomerase {ECO:0000313|EMBL:EYD73259.1}; EC=5.3.1.13 {ECO:0000313|EMBL:EYD73259.1};; TaxID=1122180 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella hongkongensis DSM 17492.;"
arabinose-5-phosphate isomerase (EC:5.3.1.13); K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13]
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00035D205D
SCNpilot_cont_750_bf_scaffold_6940_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1797..2447
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPI5_PARL1
hypothetical protein; K11719 lipopolysaccharide export system protein LptC
Uncharacterized protein {ECO:0000313|EMBL:ABS61818.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_750_bf_scaffold_6940_4
Erythrobacter sp. NAP1, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2444..2992
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WHC2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EAQ28699.1}; TaxID=237727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. NAP1.;"
lipopolysaccharide transport periplasmic protein LptA; K09774 lipopolysaccharide export system protein LptA
SCNpilot_cont_750_bf_scaffold_6940_5
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3026..3856
DNA (831bp) protein (277aa)
ABC transporter-like protein; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
ABC transporter ATP-binding protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2J1L1_9PROT
Lipopolysaccharide export system ATP-binding protein lptB {ECO:0000313|EMBL:CCQ75135.1}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
SCNpilot_cont_750_bf_scaffold_6940_6
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3866..5287
DNA (1422bp) protein (474aa)
RNA polymerase sigma-54 factor n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCJ3_PHEZH
rpoN; RNA polymerase factor sigma-54; K03092 RNA polymerase sigma-54 factor
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_750_bf_scaffold_6940_7
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5482..5958
DNA (477bp) protein (159aa)
Phosphotransferase system mannitol/fructose-specific IIA domain-containing protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JNL5_9PROT
Phosphotransferase system mannitol/fructose-specific IIA domain-containing protein {ECO:0000313|EMBL:EKE76873.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
ptsN; phosphotransferase system mannitol/fructose-specific IIA domain-containing protein
SCNpilot_cont_750_bf_scaffold_6940_8
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6091..6840)
DNA (750bp) protein (250aa)
cyclophilin type peptidyl-prolyl cis-trans isomerase; K03767 peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
Uncharacterized protein {ECO:0000313|EMBL:KFN48448.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
Peptidyl-prolyl cis-trans isomerase id=2840305 bin=GWF1_Xanthomonadales_69_6 species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
SCNpilot_cont_750_bf_scaffold_6940_9
unknown

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comp(6941..7192)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_6940_10
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7189..7605)
DNA (417bp) protein (139aa)
Heat shock protein Hsp20 n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9HKN9_GLUDA
small heat shock protein ibpA
Heat shock protein Hsp20 {ECO:0000313|EMBL:ACI50137.1}; Putative small heat shock protein ibpA {ECO:0000313|EMBL:CAP56065.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCNpilot_cont_750_bf_scaffold_6940_11
unknown

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7725..7889
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_6940_12
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7871..8734
DNA (864bp) protein (288aa)
Aminodeoxychorismate synthase, component I {ECO:0000313|EMBL:CCG36454.1}; EC=2.6.1.85 {ECO:0000313|EMBL:CCG36454.1};; TaxID=1156940 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. mangiferaeindicae LMG 941.;"
Para-aminobenzoate synthase subunit I; K03342 para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
Aminodeoxychorismate synthase, component I n=1 Tax=Xanthomonas citri pv. mangiferaeindicae LMG 941 RepID=H8FDL7_XANCI
Displaying 12 items

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