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SCNpilot_cont_750_bf_scaffold_255_curated

Search features with annotation key words

Displaying items 1-30 of 86 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_255_curated_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(220..1086)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P941_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37304.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_255_curated_2
unknown

Not on your lists

comp(1474..1608)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_255_curated_3
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1589..2587)
DNA (999bp) protein (333aa)
cytochrome d ubiquinol oxidase subunit II; K00426 cytochrome d ubiquinol oxidase subunit II [EC:1.10.3.-]
Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V3B9_SPHWW
Cytochrome d ubiquinol oxidase subunit II {ECO:0000313|EMBL:EZP73101.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
SCNpilot_cont_750_bf_scaffold_255_curated_4
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2700..3986)
DNA (1287bp) protein (429aa)
cytochrome bd ubiquinol oxidase subunit I; K00425 cytochrome d ubiquinol oxidase subunit I [EC:1.10.3.-]
Putative Cytochrome bd2, subunit I n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MG69_9SPHN
Cytochrome bd ubiquinol oxidase subunit I {ECO:0000313|EMBL:AJA09127.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
SCNpilot_cont_750_bf_scaffold_255_curated_5
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4281..4895
DNA (615bp) protein (205aa)
alkyl hydroperoxide reductase; K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]
1-Cys peroxiredoxin {ECO:0000313|EMBL:ABE61801.1}; EC=1.11.1.15 {ECO:0000313|EMBL:ABE61801.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
1-Cys peroxiredoxin n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPP6_NITHX
SCNpilot_cont_750_bf_scaffold_255_curated_6
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4892..5287
DNA (396bp) protein (132aa)
Transcriptional regulator, ArsR family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPP7_NITHX
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ABE61800.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_255_curated_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5376..6827
DNA (1452bp) protein (484aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PKL3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42121.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
5'-nucleotidase
SCNpilot_cont_750_bf_scaffold_255_curated_8
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6836..8986)
DNA (2151bp) protein (717aa)
Uncharacterized protein n=1 Tax=Spiribacter sp. UAH-SP71 RepID=U5T5U7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KFL29744.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_255_curated_9
R_Brevundimonas_68_13, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8992..10026)
DNA (1035bp) protein (345aa)
cytochrome C n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B564B4
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Brevundimonas_68_13_curated
SCNpilot_cont_750_bf_scaffold_255_curated_10
R_Brevundimonas_68_13, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10023..11270)
DNA (1248bp) protein (416aa)
cytochrome C n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B35F0E
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Brevundimonas_68_13_curated
ccoP (cytochrome cbb3 subunit III) Rose Kantor (3/1/16)
SCNpilot_cont_750_bf_scaffold_255_curated_11
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11267..11887)
DNA (621bp) protein (207aa)
cytochrome C oxidase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6D9B1
Cytochrome C oxidase {ECO:0000313|EMBL:KJR63001.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
cytochrome C oxidase, mono-heme subunit
SCNpilot_cont_750_bf_scaffold_255_curated_12
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11884..13458)
DNA (1575bp) protein (525aa)
ccoN; cytochrome-c oxidase (EC:1.9.3.1)
membrane protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B618BA
Membrane protein {ECO:0000313|EMBL:KJR63000.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
SCNpilot_cont_750_bf_scaffold_255_curated_13
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13575..14486)
DNA (912bp) protein (304aa)
cytochrome C n=1 Tax=Ochrobactrum anthropi RepID=UPI0002888BDE
Cytochrome C {ECO:0000313|EMBL:EXL07046.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
cytochrome c class I
SCNpilot_cont_750_bf_scaffold_255_curated_14
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14483..15835)
DNA (1353bp) protein (451aa)
alcohol dehydrogenase n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003AA9033
Gluconate 2-dehydrogenase cytochrome c subunit {ECO:0000313|EMBL:EEQ95211.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
gluconate 2-dehydrogenase
SCNpilot_cont_750_bf_scaffold_255_curated_15
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15919..16446)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQ59_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS31241.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
Thiol:disulfide interchange protein-like protein
SCNpilot_cont_750_bf_scaffold_255_curated_16
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16572..17279
DNA (708bp) protein (236aa)
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X404_OCHA4
ErfK/YbiS/YcfS/YnhG family protein
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:KGE81669.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
SCNpilot_cont_750_bf_scaffold_255_curated_17
Osedax symbiont Rs2, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17593..18042
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Osedax symbiont Rs2 RepID=S6GD10_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EPJ43696.1}; TaxID=1330035 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillaceae.;" source="Osedax symbiont Rs2.;"
hypothetical protein; K06889
SCNpilot_cont_750_bf_scaffold_255_curated_18
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17994..18704)
DNA (711bp) protein (237aa)
Methyltransferase type 11 n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CUP9_SIDLE
methyltransferase type 11
Tax=RBG_16_Betaproteobacteria_56_24_curated
SCNpilot_cont_750_bf_scaffold_255_curated_19
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18789..19451)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLQ9_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS31242.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
ErfK/YbiS/YcfS/YnhG family protein
SCNpilot_cont_750_bf_scaffold_255_curated_20
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19556..20359)
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NYK8_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS31243.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
redoxin
SCNpilot_cont_750_bf_scaffold_255_curated_21
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20356..22206)
DNA (1851bp) protein (617aa)
cytochrome c biogenesis protein transmembrane region; K04084 thiol:disulfide interchange protein DsbD [EC:1.8.1.8]
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NS35_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS31244.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_cont_750_bf_scaffold_255_curated_22
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22355..23101)
DNA (747bp) protein (249aa)
Thiol:disulfide interchange protein n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KW82_BORA1
Uncharacterized protein {ECO:0000313|EMBL:KKB79683.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
dsbG; disulfide isomerase/thiol-disulfide oxidase; K03805 thiol:disulfide interchange protein DsbG
SCNpilot_cont_750_bf_scaffold_255_curated_23
Fulvimarina pelagi, Fulvimarina, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23236..24414)
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G6H4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EAU42740.1}; TaxID=314231 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Fulvimarina.;" source="Fulvimarina pelagi HTCC2506.;"
peptidoglycan-binding domain 1 protein
SCNpilot_cont_750_bf_scaffold_255_curated_24
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24414..25013)
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003662CE6
DSBA oxidoreductase {ECO:0000313|EMBL:KGE00250.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
DSBA oxidoreductase
SCNpilot_cont_750_bf_scaffold_255_curated_25
Brevundimonas sp. BAL3, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25300..25950)
DNA (651bp) protein (217aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WBY2_9CAUL
Putative uncharacterized protein {ECO:0000313|EMBL:EDX82151.1}; TaxID=391600 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. BAL3.;"
extracellular solute-binding protein
SCNpilot_cont_750_bf_scaffold_255_curated_26
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26060..26398)
DNA (339bp) protein (113aa)
Transposase n=2 Tax=Oligotropha carboxidovorans RepID=B6JK62_OLICO
transposase
Transposase {ECO:0000313|EMBL:AEI08299.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_bf_scaffold_255_curated_27
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26446..26838)
DNA (393bp) protein (131aa)
Transposase n=4 Tax=Oligotropha carboxidovorans RepID=B6JK63_OLICO
transposase
Transposase {ECO:0000313|EMBL:AEI08298.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_bf_scaffold_255_curated_28
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27100..27879)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NJ86_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF20357.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hypothetical protein; K07090 rbh
SCNpilot_cont_750_bf_scaffold_255_curated_29
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27883..28311)
DNA (429bp) protein (143aa)
Twin-arginine translocation pathway signal n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CHC3_9RHIZ
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:EIZ83427.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
hypothetical protein; K07112
SCNpilot_cont_750_bf_scaffold_255_curated_30
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28308..28727)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZDG2_METPB
hypothetical protein; K07112
Uncharacterized protein {ECO:0000313|EMBL:ACB79505.1}; Flags: Precursor;; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
Displaying items 1-30 of 86 in total

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