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SCNpilot_cont_750_bf_scaffold_485_curated

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_485_curated_1
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(505..1359)
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003714FCF
ATPase MipZ {ECO:0000313|EMBL:GAN79209.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
ATPase MipZ; K03496 chromosome partitioning protein
SCNpilot_cont_750_bf_scaffold_485_curated_2
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1425..4118)
DNA (2694bp) protein (898aa)
aconitate hydratase (EC:4.2.1.3); K01681 aconitate hydratase 1 [EC:4.2.1.3]
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
Aconitate hydratase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BV50_GRABC
SCNpilot_cont_750_bf_scaffold_485_curated_3
Acetobacter malorum, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4326..4925
DNA (600bp) protein (200aa)
heme exporter protein CcmA; K02193 heme exporter protein A [EC:3.6.3.41]
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000256|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000256|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000256|HAMAP-Rule:MF_01707}; TaxID=178901 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter malorum.;"
Heme exporter protein CcmA n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FV09_ACICJ
SCNpilot_cont_750_bf_scaffold_485_curated_4
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4936..5601
DNA (666bp) protein (222aa)
Heme exporter protein B n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BV48_GRABC
heme exporter protein B; K02194 heme exporter protein B
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
SCNpilot_cont_750_bf_scaffold_485_curated_5
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5615..6508
DNA (894bp) protein (298aa)
UPI0003CFE79F related cluster n=1 Tax=unknown RepID=UPI0003CFE79F
Membrane protein {ECO:0000313|EMBL:ESZ22756.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
putative permease
SCNpilot_cont_750_bf_scaffold_485_curated_6
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6581..7984)
DNA (1404bp) protein (468aa)
DNA-binding helix-turn-helix protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A552_9PROT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EHL97779.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
MerR family transcriptional regulator; K07110
SCNpilot_cont_750_bf_scaffold_485_curated_7
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8122..9549
DNA (1428bp) protein (476aa)
isocitrate lyase; K01637 isocitrate lyase [EC:4.1.3.1]
Isocitrate lyase {ECO:0000313|EMBL:ABQ30709.1}; EC=4.1.3.1 {ECO:0000313|EMBL:ABQ30709.1};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Isocitrate lyase n=2 Tax=Acidiphilium RepID=A5FYM7_ACICJ
SCNpilot_cont_750_bf_scaffold_485_curated_8
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9625..11910)
DNA (2286bp) protein (762aa)
tme; malic enzyme (EC:1.1.1.40); K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
Putative malate dehydrogenase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A8K1_9PROT
Malate dehydrogenase {ECO:0000313|EMBL:GAN77733.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_cont_750_bf_scaffold_485_curated_9
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12012..14663
DNA (2652bp) protein (884aa)
DNA mismatch repair protein MutS n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=MUTS_GRABC rbh
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS
DNA mismatch repair protein MutS {ECO:0000255|HAMAP-Rule:MF_00096}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
SCNpilot_cont_750_bf_scaffold_485_curated_10
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14678..17521
DNA (2844bp) protein (948aa)
PII uridylyl-transferase (EC:2.7.7.59); K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59]
Bifunctional uridylyltransferase/uridylyl-removing enzyme n=2 Tax=Acidiphilium RepID=A5FX01_ACICJ
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_cont_750_bf_scaffold_485_curated_11
unknown

Not on your lists

17569..18150
DNA (582bp) protein (194aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_485_curated_12
RIFOXYB2_FULL_Elusimicrobia_49_7_curated, Elusimicrobia, Bacteria

Not on your lists

comp(18350..20506)
DNA (2157bp) protein (719aa)
hypothetical protein; K12308 beta-galactosidase [EC:3.2.1.23]
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035E647B
Tax=RIFOXYB2_FULL_Elusimicrobia_49_7_curated
SCNpilot_cont_750_bf_scaffold_485_curated_13
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20503..23088)
DNA (2586bp) protein (862aa)
Acriflavin resistance plasma membrane protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BQM9_GRABC
Uncharacterized protein {ECO:0000313|EMBL:GAN76865.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
acriflavin resistance plasma membrane protein; K07003
SCNpilot_cont_750_bf_scaffold_485_curated_14
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

23224..24366
DNA (1143bp) protein (381aa)
vitamin-B12 independent methionine synthase; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002EA040A
Tax=GWC2_Rokubacteria_70_16_curated
SCNpilot_cont_750_bf_scaffold_485_curated_15
Burkholderiaceae bacterium 26, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24460..25635)
DNA (1176bp) protein (392aa)
4-hydroxybenzoate 3-monooxygenase {ECO:0000313|EMBL:KJJ94966.1}; EC=1.14.13.2 {ECO:0000313|EMBL:KJJ94966.1};; TaxID=1619951 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 26.;"
pobA; P-hydroxybenzoate hydroxylase (4-hydroxybenzoate 3-monooxygenase) (PHBH) (EC:1.14.13.2); K00481 p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
4-hydroxybenzoate 3-monooxygenase n=1 Tax=Ralstonia sp. AU12-08 RepID=S9RVA0_9RALS
SCNpilot_cont_750_bf_scaffold_485_curated_16
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25668..27995)
DNA (2328bp) protein (776aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000367A9F1
Carbon monoxide dehydrogenase/molybdopterin binding aldehyde oxidase {ECO:0000313|EMBL:GAN75800.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
putative oxidoreductase
SCNpilot_cont_750_bf_scaffold_485_curated_17
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28071..31208)
DNA (3138bp) protein (1046aa)
RND efflux transporter, HAE1 family, translocase subunit n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J9U0_HYPSM
Transporter {ECO:0000313|EMBL:ETR78091.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
HAE1 family RND efflux transporter translocase subunit
SCNpilot_cont_750_bf_scaffold_485_curated_18
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31213..32430)
DNA (1218bp) protein (406aa)
Putative Multidrug resistance protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SNR3_9BRAD
Putative Multidrug resistance protein {ECO:0000313|EMBL:CCD95840.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
secretion protein HlyD
SCNpilot_cont_750_bf_scaffold_485_curated_19
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32676..33596
DNA (921bp) protein (307aa)
hydroxymethylglutaryl-CoA lyase (EC:4.1.3.4); K01640 hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
Hydroxymethylglutaryl-CoA lyase {ECO:0000313|EMBL:ABQ31886.1}; EC=4.1.3.4 {ECO:0000313|EMBL:ABQ31886.1};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Hydroxymethylglutaryl-CoA lyase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J524_ACIMA
SCNpilot_cont_750_bf_scaffold_485_curated_20
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33600..34775
DNA (1176bp) protein (392aa)
CoA transferase n=1 Tax=Hirschia maritima RepID=UPI00036C0AD6
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:GAN75804.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
CaiB/BaiF family protein
SCNpilot_cont_750_bf_scaffold_485_curated_21
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34775..35701
DNA (927bp) protein (309aa)
Beta-lactamase {ECO:0000256|RuleBase:RU361140, ECO:0000256|SAAS:SAAS00063099}; EC=3.5.2.6 {ECO:0000256|RuleBase:RU361140, ECO:0000256|SAAS:SAAS00063099};; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
beta-lactamase (EC:3.5.2.6); K01467 beta-lactamase [EC:3.5.2.6]
Beta-lactamase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A7W7_9PROT
SCNpilot_cont_750_bf_scaffold_485_curated_22

Not on your lists

comp(35718..36761)
DNA (1044bp) protein (348aa)
spermidine/putrescine ABC transporter substrate-binding protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000372AA6A
Uncharacterized protein {ECO:0000313|EMBL:KKN83631.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
spermidine/putrescine-binding periplasmic protein
SCNpilot_cont_750_bf_scaffold_485_curated_23
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36853..38019)
DNA (1167bp) protein (389aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
ABC transporter n=1 Tax=Roseomonas sp. B5 RepID=UPI0003802A78
spermidine/putrescine ABC transporter ATPase; K02052 putative spermidine/putrescine transport system ATP-binding protein
SCNpilot_cont_750_bf_scaffold_485_curated_24
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38113..38385
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZUV6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EHM03233.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
SCNpilot_cont_750_bf_scaffold_485_curated_25
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38391..38840
DNA (450bp) protein (150aa)
Putative uncharacterized protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BR40_GRABC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI62712.1}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
SCNpilot_cont_750_bf_scaffold_485_curated_26
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39032..40051
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036DE753
3-hydroxyisobutyryl-CoA hydrolase/enoyl-CoA hydratase {ECO:0000313|EMBL:GAN77967.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_485_curated_27
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40260..41438)
DNA (1179bp) protein (393aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
DNA polymerase IV (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7]
DNA polymerase IV n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RKV5_9PROT
SCNpilot_cont_750_bf_scaffold_485_curated_28
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41531..42451)
DNA (921bp) protein (307aa)
fructokinase (EC:2.7.1.4); K00847 fructokinase [EC:2.7.1.4]
Fructokinase {ECO:0000313|EMBL:BAJ80048.1}; EC=2.7.1.4 {ECO:0000313|EMBL:BAJ80048.1};; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
N-acetylglucosamine kinase n=2 Tax=Acidiphilium RepID=A5FXT2_ACICJ
SCNpilot_cont_750_bf_scaffold_485_curated_29
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42515..42748
DNA (234bp) protein (78aa)
transcriptional regulator; K04085 tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
Hypothetical transcriptional regulatory protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BVN6_GRABC
Putative transcriptional regulatory protein {ECO:0000313|EMBL:AHJ61968.1}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
SCNpilot_cont_750_bf_scaffold_485_curated_30
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42745..43674
DNA (930bp) protein (310aa)
Histone deacetylase family n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RKV9_9PROT
Histone deacetylase family {ECO:0000313|EMBL:EFH12054.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hypothetical protein
Displaying items 1-30 of 32 in total

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