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SCNpilot_cont_750_p_scaffold_1267

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Displaying 29 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_1267_1
Thioclava sp. DT23-4, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1085)
DNA (1083bp) protein (361aa)
Branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3V9N7_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KEO53196.1}; TaxID=1353528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. DT23-4.;"
branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein
SCNpilot_cont_750_p_scaffold_1267_2
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1120..2655)
DNA (1536bp) protein (512aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:AKI00014.1}; EC=6.2.1.3 {ECO:0000313|EMBL:AKI00014.1};; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
Uncharacterized protein n=2 Tax=Labrenzia RepID=U7G7Y0_9RHOB
AMP-dependent synthetase and ligase
SCNpilot_cont_750_p_scaffold_1267_3
Thioclava sp. DT23-4, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2808..3362
DNA (555bp) protein (185aa)
Transcriptional regulator, LuxR family/sensory box protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3V9N6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KEO53195.1}; TaxID=1353528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. DT23-4.;"
LuxR family transcriptional regulator
SCNpilot_cont_750_p_scaffold_1267_4
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3391..4635)
DNA (1245bp) protein (415aa)
sphingosine-1-phosphate lyase; K01634 sphinganine-1-phosphate aldolase [EC:4.1.2.27]
Putative sphingosine-1-phosphate lyase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RF80_PHEZH
Uncharacterized protein {ECO:0000313|EMBL:KGF69049.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
SCNpilot_cont_750_p_scaffold_1267_5
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4660..5385)
DNA (726bp) protein (242aa)
Transcriptional regulator, GntR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XKV0_VARPD
transcriptional regulator, GntR family
Putative GntR transcriptional regulator {ECO:0000313|EMBL:CCM80266.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
SCNpilot_cont_750_p_scaffold_1267_6
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5503..6333
DNA (831bp) protein (277aa)
ABC transporter related protein n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3JAN5_FRASU
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:ADP82227.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
SCNpilot_cont_750_p_scaffold_1267_7
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6330..7151
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Actinomadura flavalba RepID=UPI0003737A68
binding-protein-dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADP82226.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
SCNpilot_cont_750_p_scaffold_1267_8
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7165..8175
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3JAN6_FRASU
hypothetical protein; K02051 NitT/TauT family transport system substrate-binding protein
Uncharacterized protein {ECO:0000313|EMBL:ADP82228.1}; Flags: Precursor;; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
SCNpilot_cont_750_p_scaffold_1267_9
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8284..9066)
DNA (783bp) protein (261aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Nitratireductor indicus C115 RepID=K2N9P5_9RHIZ
Protein FixR {ECO:0000313|EMBL:CDX24011.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_750_p_scaffold_1267_10
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9143..11323)
DNA (2181bp) protein (727aa)
UPI0003CDDC16 related cluster n=1 Tax=unknown RepID=UPI0003CDDC16
Penicillin-binding protein {ECO:0000313|EMBL:CDX33538.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
penicillin-binding protein
SCNpilot_cont_750_p_scaffold_1267_11
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11623..12231
DNA (609bp) protein (203aa)
Transcriptional regulatory protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89H52_BRADU
Transcriptional regulatory protein {ECO:0000313|EMBL:BAR54177.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
transcriptional regulator
SCNpilot_cont_750_p_scaffold_1267_12
unknown

Not on your lists

12228..12497
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI0003647AF2
SCNpilot_cont_750_p_scaffold_1267_13
Streptomyces sp. AA4, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12494..13921
DNA (1428bp) protein (476aa)
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI00036CD9D3
Predicted protein {ECO:0000313|EMBL:EFL07786.1}; TaxID=591158 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AA4.;"
SSS family transporter
SCNpilot_cont_750_p_scaffold_1267_14
Acetobacter tropicalis, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13932..15008
DNA (1077bp) protein (359aa)
adenosine deaminase; K01488 adenosine deaminase [EC:3.5.4.4]
Adenosine deaminase n=1 Tax=Acetobacter tropicalis NBRC 101654 RepID=F7VFQ2_9PROT
Adenosine deaminase {ECO:0000313|EMBL:GAA09197.1}; TaxID=749388 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter tropicalis NBRC 101654.;"
SCNpilot_cont_750_p_scaffold_1267_15
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15022..16134)
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YFC2_MESOW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH84575.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_cont_750_p_scaffold_1267_16
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16192..17301
DNA (1110bp) protein (370aa)
2-nitropropane dioxygenase; K00459 nitronate monooxygenase [EC:1.13.12.16]
2-nitropropane dioxygenase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037907E8
2-nitropropane dioxygenase {ECO:0000313|EMBL:EKF20112.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_cont_750_p_scaffold_1267_17
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17390..18466
DNA (1077bp) protein (359aa)
Aliphatic nitrilase n=2 Tax=Oligotropha carboxidovorans RepID=B6JH36_OLICO
aliphatic nitrilase
Nitrilase {ECO:0000313|EMBL:AEI05987.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_p_scaffold_1267_18
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18581..18706)
DNA (126bp) protein (42aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NMQ8_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28805.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_cont_750_p_scaffold_1267_19
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18719..20122)
DNA (1404bp) protein (468aa)
Major facilitator superfamily MFS_1 n=1 Tax=Afipia sp. 1NLS2 RepID=D6VB24_9BRAD
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EFI49950.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
MFS transporter
SCNpilot_cont_750_p_scaffold_1267_trna_1
unknown

Not on your lists

20382..20454
DNA (73bp)
transferRNA
SCNpilot_cont_750_p_scaffold_1267_20
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20500..21900)
DNA (1401bp) protein (467aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
glucuronate isomerase (EC:5.3.1.12); K01812 glucuronate isomerase [EC:5.3.1.12]
Uronate isomerase n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HMP2_9RHIZ
SCNpilot_cont_750_p_scaffold_1267_21
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22068..22553)
DNA (486bp) protein (162aa)
Ferroxidase {ECO:0000256|PIRNR:PIRNR002560}; EC=1.16.3.1 {ECO:0000256|PIRNR:PIRNR002560};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Bacterioferritin n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKE1_9RHIZ
bacterioferritin; K03594 bacterioferritin
SCNpilot_cont_750_p_scaffold_1267_22
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22519..22830)
DNA (312bp) protein (104aa)
UPI0003CF58CA related cluster n=1 Tax=unknown RepID=UPI0003CF58CA
Uncharacterized protein {ECO:0000313|EMBL:CDX15887.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_1267_23
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22841..23959)
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Sulfitobacter sp. EE-36 RepID=A3SFV7_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:CDO60293.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_1267_24
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24207..24725)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3C8G6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJN00594.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_1267_25
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25013..26098)
DNA (1086bp) protein (362aa)
Probable lactose transport ATP-binding protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D0L0_9RHIZ
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGF68252.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
lactose transport ATP-binding protein LacK-like rbh
SCNpilot_cont_750_p_scaffold_1267_26
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26154..26954)
DNA (801bp) protein (267aa)
Putative IclR family transcriptional regulator n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D0K8_9RHIZ
IclR family transcriptional regulator {ECO:0000313|EMBL:KGF68251.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
transcriptional regulator IclR
SCNpilot_cont_750_p_scaffold_1267_27
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27134..28369
DNA (1236bp) protein (412aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Rhizobium sp. AP16 RepID=J2WE50_9RHIZ
sugar ABC transporter; K02027 multiple sugar transport system substrate-binding protein rbh
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:EJK81088.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_cont_750_p_scaffold_1267_28
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28472..28957
DNA (486bp) protein (162aa)
sugar ABC transporter permease n=1 Tax=Rhizobium giardinii RepID=UPI000362AAD4
ABC transporter permease {ECO:0000313|EMBL:KEA08058.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
sugar ABC transporter permease; K02025 multiple sugar transport system permease protein
Displaying 29 items

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