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SCNpilot_cont_750_p_scaffold_1616

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_1616_1
unknown

Not on your lists

2..70
DNA (69bp) protein (23aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_1616_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67..1731
DNA (1665bp) protein (555aa)
Electron transfer flavoprotein-ubiquinone oxidoreductase {ECO:0000313|EMBL:EYR81198.1}; EC=1.5.5.1 {ECO:0000313|EMBL:EYR81198.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
etf; electron transfer flavoprotein-ubiquinone oxidoreductase/putative oxidoreductase (EC:1.5.5.1); K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] rbh
Electron transfer flavoprotein-ubiquinone oxidoreductase/ putative oxidoreductase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MEE0_RHISN
SCNpilot_cont_750_p_scaffold_1616_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1850..2608
DNA (759bp) protein (253aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B6A0F1_RHILW
Dehydrogenase {ECO:0000313|EMBL:EYR82758.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_cont_750_p_scaffold_1616_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2694..4817)
DNA (2124bp) protein (708aa)
Conjugal transfer protein TraG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CL71_9RHIZ
Conjugal transfer protein TraG {ECO:0000313|EMBL:EYR82759.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Protein virD4; K03205 type IV secretion system protein VirD4
SCNpilot_cont_750_p_scaffold_1616_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4814..5812)
DNA (999bp) protein (333aa)
Type IV secretion system protein VirB11 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5I5_9RHIZ
Type IV secretion system protein VirB11 {ECO:0000313|EMBL:EYR82760.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
type II secretion system protein E; K03196 type IV secretion system protein VirB11
SCNpilot_cont_750_p_scaffold_1616_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5809..7227)
DNA (1419bp) protein (473aa)
Type IV secretion system protein VirB10 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EN42_9RHIZ
Type IV secretion system protein VirB10 {ECO:0000313|EMBL:EYR82761.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conjugal transfer protein; K03195 type IV secretion system protein VirB10
SCNpilot_cont_750_p_scaffold_1616_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7224..8009)
DNA (786bp) protein (262aa)
P-type conjugative transfer protein VirB9 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQP5_9RHIZ
P-type conjugative transfer protein VirB9 {ECO:0000313|EMBL:EYR82762.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conjugal transfer protein TrbG/VirB9/CagX; K03204 type IV secretion system protein VirB9
SCNpilot_cont_750_p_scaffold_1616_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8006..8740)
DNA (735bp) protein (245aa)
VirB8 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVE8_9RHIZ
VirB8 {ECO:0000313|EMBL:EYR82763.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
virB8; type IV secretion protein VirB8; K03203 type IV secretion system protein VirB8
SCNpilot_cont_750_p_scaffold_1616_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8895..9266)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CL76_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82764.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_750_p_scaffold_1616_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9283..9516)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5J0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82765.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_750_p_scaffold_1616_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9571..10590)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EN46_9RHIZ
Type IV secretory pathway, VirB6 component {ECO:0000313|EMBL:EYR82766.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conjugal transfer protein; K03201 type IV secretion system protein VirB6
SCNpilot_cont_750_p_scaffold_1616_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10595..10768)
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQQ1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82767.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_750_p_scaffold_1616_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10775..11491)
DNA (717bp) protein (239aa)
UPI0003D04ACA related cluster n=1 Tax=unknown RepID=UPI0003D04ACA
Conjugal transfer protein {ECO:0000313|EMBL:EYR82768.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conjugal transfer protein
SCNpilot_cont_750_p_scaffold_1616_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11503..12666)
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCX9_9RHIZ
Putative soluble lytic transglycosylase {ECO:0000313|EMBL:EYR82769.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_750_p_scaffold_1616_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12659..15070)
DNA (2412bp) protein (804aa)
Type IV secretion system protein VirB4 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXH1_9RHIZ
Type IV secretion/conjugal transfer ATPase, VirB4 family {ECO:0000313|EMBL:EYR82770.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
virB4-2; conjugal transfer protein; K03199 type IV secretion system protein VirB4
SCNpilot_cont_750_p_scaffold_1616_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15067..15357)
DNA (291bp) protein (97aa)
Type IV secretory pathway, VirB3 component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFD6_9RHIZ
Type IV secretory pathway, VirB3 component {ECO:0000313|EMBL:EYR82771.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
type IV secretory pathway, VirB3-like; K03198 type IV secretion system protein VirB3
SCNpilot_cont_750_p_scaffold_1616_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15359..15682)
DNA (324bp) protein (108aa)
Type IV secretory pathway, VirB2 component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHH5_9RHIZ
Type IV secretory pathway, VirB2 component {ECO:0000313|EMBL:EYR82772.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conjugal transfer protein trbc; K03197 type IV secretion system protein VirB2
SCNpilot_cont_750_p_scaffold_1616_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15726..16286)
DNA (561bp) protein (187aa)
Lytic transglycosylase catalytic n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMB5_9RHIZ
Soluble lytic murein transglycosylase {ECO:0000313|EMBL:EYR82773.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Lytic transglycosylase catalytic
SCNpilot_cont_750_p_scaffold_1616_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16376..16993
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCY4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82774.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_750_p_scaffold_1616_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16983..17489
DNA (507bp) protein (169aa)
Putative succinoglycan biosynthesis protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXH5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82775.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Micrococcal nuclease-like protein (thermonuclease)
SCNpilot_cont_750_p_scaffold_1616_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17439..17696)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFE2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82776.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_750_p_scaffold_1616_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18149..18925
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHI0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82777.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_1616_23
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18981..19874)
DNA (894bp) protein (298aa)
LysR family transcriptional regulator n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F234
LysR family transcriptional regulator {ECO:0000313|EMBL:KGJ03848.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
LysR family transcriptional regulator
SCNpilot_cont_750_p_scaffold_1616_24
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20008..21195
DNA (1188bp) protein (396aa)
transcriptional regulator n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F235
Transcriptional regulator {ECO:0000313|EMBL:KGJ03849.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
major facilitator superfamily protein
SCNpilot_cont_750_p_scaffold_1616_25
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21197..21658
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YCB2_MESOW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH86645.1}; Flags: Precursor;; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_cont_750_p_scaffold_1616_26
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21705..22811
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JTR7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ELT47454.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
hypothetical protein; K06889 rbh
SCNpilot_cont_750_p_scaffold_1616_27
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22894..23538)
DNA (645bp) protein (215aa)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
dnaE2; Error-prone DNA polymerase (fragment) (EC:2.7.7.7)
Error-prone DNA polymerase n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JL87_9RHIZ
Displaying 27 items

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