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SCNpilot_cont_750_p_scaffold_1966

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Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_1966_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..517
DNA (516bp) protein (172aa)
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL26_9GAMM
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter {ECO:0000313|EMBL:EIL87917.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hydrophobe/amphiphile efflux-1 (HAE1) family transporter
SCNpilot_cont_750_p_scaffold_1966_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

517..1959
DNA (1443bp) protein (481aa)
NodT family efflux transporter outer membrane lipoprotein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL28_9GAMM
NodT family efflux transporter outer membrane lipoprotein {ECO:0000313|EMBL:EIL87919.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
efflux transporter, outer membrane factor lipoprotein, NodT family rbh
SCNpilot_cont_750_p_scaffold_1966_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1956..2702
DNA (747bp) protein (249aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodanobacter denitrificans RepID=I4WUQ0_9GAMM
short-chain dehydrogenase of unknown substrate specificity rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG87255.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_p_scaffold_1966_4
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2732..3766
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002DCF0C5
2-alkenal reductase {ECO:0000313|EMBL:EYR69655.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
zinc-binding dehydrogenase family oxidoreductase rbh
SCNpilot_cont_750_p_scaffold_1966_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3776..4273)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU47_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_750_p_scaffold_1966_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4535..5725
DNA (1191bp) protein (397aa)
Peptidase M23 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU48_9GAMM
Peptidase M23 {ECO:0000313|EMBL:EIL90739.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
peptidase M23
SCNpilot_cont_750_p_scaffold_1966_7
unknown

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5722..5868
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_1966_8
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5865..6812
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F07DED
Uncharacterized protein {ECO:0000313|EMBL:AHX15350.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
periplasmic component of the Tol biopolymer transport system
SCNpilot_cont_750_p_scaffold_1966_9
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6857..7741
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002EC2C69
Uncharacterized protein {ECO:0000313|EMBL:GAN44960.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
periplasmic component of the Tol biopolymer transport system
SCNpilot_cont_750_p_scaffold_1966_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7867..8952
DNA (1086bp) protein (362aa)
Signal transduction histidine kinase LytS n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU49_9GAMM
Signal transduction histidine kinase LytS {ECO:0000313|EMBL:EIL90740.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative signal transduction histidine kinase
SCNpilot_cont_750_p_scaffold_1966_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8949..9704
DNA (756bp) protein (252aa)
LytTR family two component transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU50_9GAMM
LytTR family two component transcriptional regulator {ECO:0000313|EMBL:EIL90741.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
LytTR family two component transcriptional regulator; K02477 two-component system, LytT family, response regulator
SCNpilot_cont_750_p_scaffold_1966_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9765..10337
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU52_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90743.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein rbh
SCNpilot_cont_750_p_scaffold_1966_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10427..12742)
DNA (2316bp) protein (772aa)
type I restriction enzyme subunit; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3] rbh
Type I restriction enzyme subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU53_9GAMM
Type I restriction enzyme subunit {ECO:0000313|EMBL:EIL90744.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_cont_750_p_scaffold_1966_14
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12739..13035)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUP4_9GAMM
Plasmid stabilization protein {ECO:0000313|EMBL:KGO99254.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
plasmid stabilization system protein
SCNpilot_cont_750_p_scaffold_1966_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13037..13321)
DNA (285bp) protein (95aa)
Ribbon-helix-helix protein, copG family n=1 Tax=Rhodanobacter denitrificans RepID=M4NA44_9GAMM
Ribbon-helix-helix protein, copG family
Ribbon-helix-helix protein, copG family {ECO:0000313|EMBL:AGG87249.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_p_scaffold_1966_16
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13397..14626)
DNA (1230bp) protein (410aa)
type I restriction-modification system substrate-binding subunit ; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3]
Putative uncharacterized protein id=2164859 bin=GWE2_Bacteroidetes_32_14 species=Geobacillus thermoleovorans genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWE2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=Good +
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
SCNpilot_cont_750_p_scaffold_1966_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14623..16074)
DNA (1452bp) protein (484aa)
type I restriction enzyme methyltransferase subunit; K03427 type I restriction enzyme M protein [EC:2.1.1.72] rbh
Type I restriction enzyme methyltransferase subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU58_9GAMM
Type I restriction enzyme methyltransferase subunit {ECO:0000313|EMBL:EIL90749.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_cont_750_p_scaffold_1966_18
unknown

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16388..16858
DNA (471bp) protein (157aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_1966_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17023..17973
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU59_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90750.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
periplasmic component of the Tol biopolymer transport system rbh
SCNpilot_cont_750_p_scaffold_1966_20
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17997..19004
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUN9_9GAMM
periplasmic component of the Tol biopolymer transport system rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_750_p_scaffold_1966_21
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19029..19394)
DNA (366bp) protein (122aa)
Mannose-6-phosphate isomerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUN8_9GAMM
mannose-6-phosphate isomerase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_750_p_scaffold_1966_22
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19391..19708)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NCT3_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_750_p_scaffold_1966_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19785..19961)
DNA (177bp) protein (59aa)
Putative permease (Fragment) n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WC14_9GAMM
Putative permease {ECO:0000313|EMBL:EIL97005.1}; Flags: Fragment;; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative permease
Displaying 23 items

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