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SCNpilot_cont_750_p_scaffold_4091

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_4091_1
unknown

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3..101
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_4091_2
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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98..382
DNA (285bp) protein (95aa)
30S ribosomal protein S19 n=1 Tax=Rhodovulum sp. PH10 RepID=J6UF21_9RHOB
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
SCNpilot_cont_750_p_scaffold_4091_3
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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383..868
DNA (486bp) protein (162aa)
50S ribosomal protein L22 n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JV20_HYPDA
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_cont_750_p_scaffold_4091_4
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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868..1590
DNA (723bp) protein (241aa)
30S ribosomal protein S3 n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YM74_9BRAD
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
SCNpilot_cont_750_p_scaffold_4091_5
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1603..2016
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Kaistia granuli RepID=UPI00037397E5
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16
SCNpilot_cont_750_p_scaffold_4091_6
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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2028..2291
DNA (264bp) protein (88aa)
50S ribosomal protein L29 n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IUU5_POLGS
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_750_p_scaffold_4091_7
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2296..2535
DNA (240bp) protein (80aa)
30S ribosomal protein S17 n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FABD36
rpsQ; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
30S ribosomal protein S17 {ECO:0000255|HAMAP-Rule:MF_01345}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_750_p_scaffold_4091_8
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2557..2925
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035C5210
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_cont_750_p_scaffold_4091_9
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2926..3240
DNA (315bp) protein (105aa)
50S ribosomal protein L24 n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=RL24_BEII9
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24
SCNpilot_cont_750_p_scaffold_4091_10
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3233..3910
DNA (678bp) protein (226aa)
50S ribosomal protein L5 n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A3095E
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5
SCNpilot_cont_750_p_scaffold_4091_11
Asticcacaulis sp. AC466, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3918..4223
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Asticcacaulis sp. AC466 RepID=V4P2U9_9CAUL
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1282362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC466.;"
30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
SCNpilot_cont_750_p_scaffold_4091_12
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4236..4628
DNA (393bp) protein (131aa)
30S ribosomal protein S8 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RS8_HYPNA
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorpha PS728.;"
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
SCNpilot_cont_750_p_scaffold_4091_13
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4639..5172
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3HZT9_RHOVT
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
SCNpilot_cont_750_p_scaffold_4091_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5174..5521
DNA (348bp) protein (116aa)
50S ribosomal protein L18 n=1 Tax=Sphingomonas sp. S17 RepID=F3X0I4_9SPHN
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000313|EMBL:AJP74560.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
SCNpilot_cont_750_p_scaffold_4091_15
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5583..6182
DNA (600bp) protein (200aa)
30S ribosomal protein S5 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RS5_PARL1
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
30S ribosomal protein S5 {ECO:0000255|HAMAP-Rule:MF_01307}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_750_p_scaffold_4091_16
unknown

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6195..6389
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI0003682699
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
SCNpilot_cont_750_p_scaffold_4091_17
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6444..6995
DNA (552bp) protein (184aa)
50S ribosomal protein L15 n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036653C4
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_cont_750_p_scaffold_4091_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7100..8440
DNA (1341bp) protein (447aa)
Protein translocase subunit SecY n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWT1_PARL1
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_750_p_scaffold_4091_19
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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8437..9015
DNA (579bp) protein (193aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinu
adk; adenylate kinase Adk (EC:2.7.4.3)
adenylate kinase n=1 Tax=Rhizobium meliloti RepID=UPI00037E4A47
SCNpilot_cont_750_p_scaffold_4091_20
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9292..9669
DNA (378bp) protein (126aa)
30S ribosomal protein S13 n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QZD2_BREDI
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
30S ribosomal protein S13
SCNpilot_cont_750_p_scaffold_4091_21
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

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9671..10069
DNA (399bp) protein (133aa)
30S ribosomal protein S11 n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=RS11_PHEZH
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
rpsK; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
SCNpilot_cont_750_p_scaffold_4091_22
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10189..11103
DNA (915bp) protein (305aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha n=1 Tax=Amorphus coralli RepID=UPI0003774B06
Displaying 22 items

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