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SCNpilot_cont_750_p_scaffold_3744

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_3744_1
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1088)
DNA (1086bp) protein (362aa)
ABC-2 type transporter n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VCN7_SPHWW
ABC-2 type transporter; K09686 antibiotic transport system permease protein rbh
ABC-2 type transporter {ECO:0000313|EMBL:ABQ70053.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_750_p_scaffold_3744_2
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1085..2911)
DNA (1827bp) protein (609aa)
multidrug ABC transporter ATP-binding protein n=1 Tax=Sphingomonas wittichii RepID=UPI00037C27CB
ABC transporter-like protein; K01990 ABC-2 type transport system ATP-binding protein rbh
ABC transporter related {ECO:0000313|EMBL:ABQ70052.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_750_p_scaffold_3744_3
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2871..3902)
DNA (1032bp) protein (344aa)
transporter n=1 Tax=Sphingomonas wittichii RepID=UPI0002F8E773
Secretion protein HlyD {ECO:0000313|EMBL:KER34723.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
hypothetical protein; K01993 HlyD family secretion protein rbh
SCNpilot_cont_750_p_scaffold_3744_4
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3899..4507)
DNA (609bp) protein (203aa)
Transcriptional regulator, TetR family n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VCN4_SPHWW
TetR family transcriptional regulator rbh
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABQ70050.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_750_p_scaffold_3744_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4662..4844)
DNA (183bp) protein (61aa)
Conjugal transfer protein TrbC n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VP33_RHOPX
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
Conjugal transfer protein TrbC {ECO:0000313|EMBL:ADU42479.1}; Flags: Precursor;; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_750_p_scaffold_3744_6
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4841..6973)
DNA (2133bp) protein (711aa)
conjugal transfer protein TrbB n=1 Tax=Hoeflea sp. 108 RepID=UPI00037B9793
Conjugal transfer protein TrbB {ECO:0000313|EMBL:KFL26573.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
trbB2; P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
SCNpilot_cont_750_p_scaffold_3744_7
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7104..7592
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SAQ1_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH51983.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_750_p_scaffold_3744_8
Asaia platycodi, Asaia, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7602..7982)
DNA (381bp) protein (127aa)
Peptide methionine sulfoxide reductase MsrB {ECO:0000313|EMBL:CDG40044.1}; EC=1.8.4.12 {ECO:0000313|EMBL:CDG40044.1};; TaxID=1382230 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Asaia.;" source="Asaia platycodi SF2.1.;"
methionine-R-sulfoxide reductase; K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
Transcriptional regulator n=1 Tax=Asaia sp. SF2.1 RepID=V8A677_9PROT
SCNpilot_cont_750_p_scaffold_3744_9
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7983..8393)
DNA (411bp) protein (137aa)
Large-conductance mechanosensitive channel n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=MSCL_METFK
large conductance mechanosensitive channel protein; K03282 large conductance mechanosensitive channel
Large-conductance mechanosensitive channel {ECO:0000255|HAMAP-Rule:MF_00115}; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
SCNpilot_cont_750_p_scaffold_3744_10
unknown

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comp(8429..8812)
DNA (384bp) protein (128aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_3744_11
alpha proteobacterium IMCC14465, Alphaproteobacteria, Proteobacteria, Bacteria

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9009..9206
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=2 Tax=unclassified Alphaproteobacteria (miscellaneous) RepID=J9DZ07_9PROT
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1220535 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium IMCC14465.;"
LSU ribosomal protein L35p; K02916 large subunit ribosomal protein L35
SCNpilot_cont_750_p_scaffold_3744_12
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9223..9570
DNA (348bp) protein (116aa)
50S ribosomal protein L20 n=2 Tax=Oligotropha carboxidovorans RepID=RL20_OLICO
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
50S ribosomal protein L20 {ECO:0000255|HAMAP-Rule:MF_00382}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_p_scaffold_3744_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9661..10773
DNA (1113bp) protein (371aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
pheS; phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
phenylalanyl-tRNA synthetase subunit alpha n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E813C3
SCNpilot_cont_750_p_scaffold_3744_14
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10770..11834
DNA (1065bp) protein (355aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
pheT; phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
phenylalanyl-tRNA synthetase subunit beta n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F0EC46
Displaying 14 items

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