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SCNpilot_cont_750_p_scaffold_3785

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_3785_1
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1195)
DNA (1194bp) protein (398aa)
Glycolate oxidase iron-sulfur subunit n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H6I8_9BRAD
Glycolate oxidase iron-sulfur subunit {ECO:0000256|PIRNR:PIRNR000139}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
4Fe-4S ferredoxin; K11473 glycolate oxidase iron-sulfur subunit
SCNpilot_cont_750_p_scaffold_3785_2
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1192..2430)
DNA (1239bp) protein (413aa)
FAD/FMN-dependent dehydrogenase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QHN8_9BRAD
FAD/FMN-dependent dehydrogenase {ECO:0000313|EMBL:EIG59294.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
glcE; glycolate oxidase subunit; K11472 glycolate oxidase FAD binding subunit
SCNpilot_cont_750_p_scaffold_3785_3
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2502..3995)
DNA (1494bp) protein (498aa)
Glycolate oxidase, subunit GlcD {ECO:0000313|EMBL:CCE06521.1}; EC=1.1.3.15 {ECO:0000313|EMBL:CCE06521.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
glcD; glycolate oxidase subunit GlcD (EC:1.1.3.15); K00104 glycolate oxidase [EC:1.1.3.15]
Glycolate oxidase, subunit GlcD n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TJ83_9BRAD
SCNpilot_cont_750_p_scaffold_3785_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4183..4569
DNA (387bp) protein (129aa)
cystathionine beta-lyase n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003661861
cytochrome c, class I; K08738 cytochrome c
Cytochrome c, class I {ECO:0000313|EMBL:ABE63940.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_p_scaffold_3785_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4582..5256)
DNA (675bp) protein (225aa)
Transcriptional regulator, TetR family n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IZ26_RHOP2
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABD06534.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_750_p_scaffold_3785_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5374..5685)
DNA (312bp) protein (104aa)
Branched-chain amino acid transport n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IZ27_RHOP2
branched chain amino acid ABC transporter
Branched-chain amino acid transport {ECO:0000313|EMBL:ABD06533.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_750_p_scaffold_3785_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5678..6427)
DNA (750bp) protein (250aa)
AzlC family protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07HG8_RHOP5
AzlC-like protein rbh
AzlC family protein {ECO:0000313|EMBL:ABJ08616.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_750_p_scaffold_3785_8
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6593..8539)
DNA (1947bp) protein (649aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
ftsH; metalloprotease FtsH (EC:3.4.24.-); K03798 cell division protease FtsH [EC:3.4.24.-] rbh
ATP-dependent zinc metalloprotease FtsH n=2 Tax=Bradyrhizobiaceae RepID=F7QFH3_9BRAD
SCNpilot_cont_750_p_scaffold_3785_9
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8725..9762)
DNA (1038bp) protein (346aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
tRNA(Ile)-lysidine synthetase-like protein; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
tRNA(Ile)-lysidine synthase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P6R4_9BRAD
SCNpilot_cont_750_p_scaffold_3785_10
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9872..10888)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G0W3_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL74400.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_cont_750_p_scaffold_3785_11
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11140..11637)
DNA (498bp) protein (166aa)
Peptidoglycan-associated lipoprotein n=2 Tax=Rhodopseudomonas palustris RepID=B3QID0_RHOPT
Membrane protein {ECO:0000313|EMBL:KJC43749.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
OmpA/MotB
Displaying 11 items

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