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SCNpilot_cont_750_p_scaffold_2076

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_2076_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..878
DNA (876bp) protein (292aa)
selU; tRNA 2-selenouridine synthase SelU (EC:2.9.1.-)
tRNA 2-selenouridine synthase {ECO:0000256|SAAS:SAAS00035454}; EC=2.9.1.- {ECO:0000256|SAAS:SAAS00035457};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
tRNA 2-selenouridine synthase SelU n=1 Tax=Variovorax paradoxus B4 RepID=T1X6J9_VARPD
SCNpilot_cont_750_p_scaffold_2076_2
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(879..2363)
DNA (1485bp) protein (495aa)
Xanthine permease n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0JB15_ALCFA
Xanthine permease {ECO:0000313|EMBL:CDM22515.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
xanthine permease; K03458 nucleobase:cation symporter-2, NCS2 family
SCNpilot_cont_750_p_scaffold_2076_3
Cellvibrio japonicus, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2633..3712
DNA (1080bp) protein (360aa)
rfbB; dTDP-glucose 4,6-dehydratase (EC:4.2.1.46); K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] rbh
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=498211 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio japonicus (strain Ueda107) (Pseudomonas fluorescens subsp.; cellulosa).;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Cellvibrio japonicus (strain Ueda107) RepID=B3PFY1_CELJU
SCNpilot_cont_750_p_scaffold_2076_4
Candidatus Glomeribacter gigasporarum, Candidatus Glomeribacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3798..4097)
DNA (300bp) protein (100aa)
Addiction module antidote protein, HigA family n=1 Tax=Candidatus Glomeribacter gigasporarum BEG34 RepID=G2JAX4_9BURK
Addiction module antidote protein, HigA family {ECO:0000313|EMBL:CCD29926.1}; TaxID=1070319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Candidatus Glomeribacter.;" source="Candidatus Glomeribacter gigasporarum BEG34.;"
XRE family transcriptional regulator
SCNpilot_cont_750_p_scaffold_2076_5
unknown

Not on your lists

comp(4516..4695)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_2076_6
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4902..6557)
DNA (1656bp) protein (552aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00036AE5C9
integral membrane sensor signal transduction histidine kinase rbh
SCNpilot_cont_750_p_scaffold_2076_7
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6718..8301)
DNA (1584bp) protein (528aa)
glucose-6-phosphate isomerase; K01810 glucose-6-phosphate isomerase [EC:5.3.1.9] rbh
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
Glucose-6-phosphate isomerase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GP32_PUSST
SCNpilot_cont_750_p_scaffold_2076_8
Photorhabdus temperata, Photorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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8455..8715
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RUM2_ACCPU
Virulence-associated protein {ECO:0000313|EMBL:ETS29687.1}; TaxID=1004151 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Photorhabdus.;" source="Photorhabdus temperata subsp. khanii NC19.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_2076_9
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8712..9116
DNA (405bp) protein (135aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1304892 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis Xac29-1.;"
Ribonuclease VapC n=4 Tax=Xanthomonas RepID=Q3C003_XANC5
hypothetical protein
SCNpilot_cont_750_p_scaffold_2076_10
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9156..10319)
DNA (1164bp) protein (388aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002F26241
amino-acid-binding periplasmic (PBP) ABC transporter protein; K01999 branched-chain amino acid transport system substrate-binding protein
Putative amino-acid-binding periplasmic (PBP) ABC transporter protein {ECO:0000313|EMBL:CAI08132.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCNpilot_cont_750_p_scaffold_2076_11
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10425..11393)
DNA (969bp) protein (323aa)
rieske [2Fe-2S] domain-containing protein 5; K03862 vanillate monooxygenase [EC:1.14.13.82]
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00037D3B1F
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCNpilot_cont_750_p_scaffold_2076_12
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11524..12375
DNA (852bp) protein (284aa)
Uncharacterized protein n=2 Tax=Pseudomonas aeruginosa RepID=U8LQQ3_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:ERV69674.1}; TaxID=1402545 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BL04.;"
LuxR family transcriptional regulator
SCNpilot_cont_750_p_scaffold_2076_13
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12421..13680
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GP36_PUSST
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEC21699.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
SCNpilot_cont_750_p_scaffold_2076_14
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13665..14066
DNA (402bp) protein (134aa)
Polysaccharide synthesis protein GtrA n=1 Tax=Advenella kashmirensis W13003 RepID=V8QVC9_9BURK
Polysaccharide synthesis protein GtrA {ECO:0000313|EMBL:ETF03270.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
GtrA family protein
SCNpilot_cont_750_p_scaffold_2076_15
unknown

Not on your lists

comp(14262..14522)
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI000367C14A
SCNpilot_cont_750_p_scaffold_2076_16
Burkholderia rhizoxinica, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14758..15078)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI0003084DEF
Plasmid stabilization system toxin protein
Plasmid stabilization system toxin protein {ECO:0000313|EMBL:CBW75046.1}; TaxID=882378 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia rhizoxinica (strain DSM 19002 / CIP 109453 / HKI 454).;"
SCNpilot_cont_750_p_scaffold_2076_17
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15075..15347)
DNA (273bp) protein (91aa)
prevent-host-death protein n=1 Tax=Burkholderia ubonensis RepID=UPI00016A674E
Uncharacterized protein {ECO:0000313|EMBL:CDM23130.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Plasmid stabilization system antitoxin protein
SCNpilot_cont_750_p_scaffold_2076_18
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15489..15797)
DNA (309bp) protein (103aa)
Transcriptional regulator n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7T5X3_ALCXX
Transcriptional regulator {ECO:0000313|EMBL:EGP44283.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
transcriptional regulator
SCNpilot_cont_750_p_scaffold_2076_19
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16270..17268)
DNA (999bp) protein (333aa)
glycosyl transferase n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI000237649C
Glycosyltransferase {ECO:0000313|EMBL:AIY43988.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
glycosyl transferase family protein rbh
SCNpilot_cont_750_p_scaffold_2076_20
Cellvibrio japonicus, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17426..18862
DNA (1437bp) protein (479aa)
Putative membrane protein n=1 Tax=Cellvibrio japonicus (strain Ueda107) RepID=B3PFK8_CELJU
hypothetical protein rbh
Putative membrane protein {ECO:0000313|EMBL:ACE83221.1}; TaxID=498211 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio japonicus (strain Ueda107) (Pseudomonas fluorescens subsp.; cellulosa).;"
Displaying 20 items

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