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SCNpilot_cont_750_p_scaffold_2088

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_2088_1
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..664
DNA (663bp) protein (221aa)
Respiratory nitrate reductase subunit gamma n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B7R5_9RHIZ
respiratory nitrate reductase subunit gamma
Respiratory nitrate reductase subunit gamma {ECO:0000313|EMBL:AGK58307.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_750_p_scaffold_2088_2
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

661..1380
DNA (720bp) protein (240aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00015172}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00015172};; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B5K8_9RHIZ
PpiC-type peptidyl-prolyl cis-trans isomerase rbh
SCNpilot_cont_750_p_scaffold_2088_3
Sphingomonas sp. NS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1624..3273
DNA (1650bp) protein (550aa)
Cytochrome c oxidase subunit CcoN {ECO:0000313|EMBL:AJW29229.1}; EC=1.9.3.1 {ECO:0000313|EMBL:AJW29229.1};; TaxID=908605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. NS2.;"
ccoN2; cbb3-type cytochrome oxidase subunit CcoN; K00404 cytochrome c oxidase cbb3-type subunit I [EC:1.9.3.1]
cytochrome C oxidase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000378D77B
SCNpilot_cont_750_p_scaffold_2088_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3280..4014
DNA (735bp) protein (245aa)
peptidase S41 n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E11059
Cytochrome c oxidase, cbb3-type, subunit II {ECO:0000313|EMBL:EKS36739.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ccoO2; cbb3-type cytochrome oxidase subunit CcoO; K00405 cytochrome c oxidase cbb3-type subunit II
SCNpilot_cont_750_p_scaffold_2088_5
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4011..4184
DNA (174bp) protein (58aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003760858
cbb3-type cytochrome oxidase subunit; K00407 cytochrome c oxidase cbb3-type subunit IV
Cbb3-type cytochrome oxidase component {ECO:0000313|EMBL:ABG63642.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_750_p_scaffold_2088_6
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4175..5056
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F1E1B4
ccoP2; cbb3-type cytochrome oxidase subunit CcoP; K00406 cytochrome c oxidase cbb3-type subunit III
Cbb3-type cytochrome oxidase, subunit CcoP {ECO:0000313|EMBL:AEI05684.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_p_scaffold_2088_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5053..5235
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C8A8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81704.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_750_p_scaffold_2088_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5252..6106
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E3BAA3
Uncharacterized protein {ECO:0000313|EMBL:EKS36743.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
putative transmembrane protein
SCNpilot_cont_750_p_scaffold_2088_9
unknown

Not on your lists

6103..8406
DNA (2304bp) protein (768aa)
copper-translocating P-type ATPase (EC:3.6.3.4)
Nitrogen fixation protein FixI {ECO:0000313|EMBL:CPR20835.1}; EC=3.6.3.- {ECO:0000313|EMBL:CPR20835.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
Copper-translocating P-type ATPase n=3 Tax=Oligotropha carboxidovorans RepID=B6JIK5_OLICO
SCNpilot_cont_750_p_scaffold_2088_10
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8403..8555
DNA (153bp) protein (51aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002EBD54B
cytochrome oxidase maturation protein, cbb3-type
Cytochrome oxidase maturation protein, cbb3-type {ECO:0000313|EMBL:AGK56711.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_750_p_scaffold_2088_11
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8588..9037)
DNA (450bp) protein (150aa)
Pseudoazurin n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MPN7_9RHIZ
Pseudoazurin {ECO:0000313|EMBL:EKF19282.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
pseudoazurin
SCNpilot_cont_750_p_scaffold_2088_12
Lyngbya confervoides, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(9086..9427)
DNA (342bp) protein (114aa)
Ferredoxin-2 n=2 Tax=Bartonella tamiae RepID=J0R023_9RHIZ
Ferredoxin {ECO:0000313|EMBL:KIF43190.1}; TaxID=1574623 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya confervoides BDU141951.;"
4Fe-4S ferredoxin; K05524 ferredoxin
SCNpilot_cont_750_p_scaffold_2088_13
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9504..9785)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI000369BE8E
Uncharacterized protein {ECO:0000313|EMBL:AKH98808.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
SCNpilot_cont_750_p_scaffold_2088_14
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10010..10264
DNA (255bp) protein (85aa)
Hemerythrin HHE cation binding protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JAM3_OLICO
hemerythrin HHE cation binding protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05003.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_p_scaffold_2088_15
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10352..11680
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNB8_NITHX
Uncharacterized protein {ECO:0000313|EMBL:KJS10185.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_2088_16
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11697..12230
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3C9_9BRAD
hypothetical protein
SirA-like protein {ECO:0000313|EMBL:CEG07045.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_cont_750_p_scaffold_2088_17
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12260..12883
DNA (624bp) protein (208aa)
Nifu protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JAM0_OLICO
nifu protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05006.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_p_scaffold_2088_18
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12892..13128
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NRA7_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:CDX53620.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_cont_750_p_scaffold_2088_19
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13166..13687)
DNA (522bp) protein (174aa)
Single-stranded DNA-binding protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NLH7_9RHIZ
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
ssDNA-binding protein; K03111 single-strand DNA-binding protein
SCNpilot_cont_750_p_scaffold_2088_20
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13896..14216
DNA (321bp) protein (107aa)
UPI0003D06A95 related cluster n=1 Tax=unknown RepID=UPI0003D06A95
ArsR family transcription regulator {ECO:0000313|EMBL:CDX19681.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
transcriptional regulator
SCNpilot_cont_750_p_scaffold_2088_21
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14213..14653
DNA (441bp) protein (147aa)
UPI0003CFDD7F related cluster n=1 Tax=unknown RepID=UPI0003CFDD7F
ATPase {ECO:0000313|EMBL:ESZ23867.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
Activator of Hsp90 ATPase 1 family protein
SCNpilot_cont_750_p_scaffold_2088_22
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14664..15269
DNA (606bp) protein (202aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
endopeptidase Clp (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5F5C1_9RHIZ
SCNpilot_cont_750_p_scaffold_2088_23
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15986..17308)
DNA (1323bp) protein (441aa)
saccharopine dehydrogenase (EC:1.5.1.7)
saccharopine dehydrogenase n=1 Tax=Meganema perideroedes RepID=UPI00036B3607
Saccharopine dehydrogenase {ECO:0000313|EMBL:EXL09327.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
SCNpilot_cont_750_p_scaffold_2088_24
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17348..18460)
DNA (1113bp) protein (371aa)
Carboxynorspermidine/carboxyspermidine decarboxylase {ECO:0000256|PIRNR:PIRNR038941}; Short=CANS DC/CAS DC {ECO:0000256|PIRNR:PIRNR038941};; Short=CANSDC/CASDC {ECO:0000256|PIRNR:PIRNR038941};; EC=4.1.1.96 {ECO:0000256|PIRNR:PIRNR038941};; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
nspC; carboxynorspermidine decarboxylase; K13747 carboxynorspermidine decarboxylase [EC:4.1.1.-]
carboxynorspermidine decarboxylase n=1 Tax=Meganema perideroedes RepID=UPI00038189AB
Displaying 24 items

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