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SCNpilot_cont_750_p_scaffold_2272

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_2272_1
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..659
DNA (657bp) protein (219aa)
iron ABC transporter substrate-binding protein n=1 Tax=Rhizobium giardinii RepID=UPI000375408F
Iron ABC transporter substrate-binding protein {ECO:0000313|EMBL:EZQ16357.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
extracellular solute-binding protein family 1
SCNpilot_cont_750_p_scaffold_2272_2
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

738..1637
DNA (900bp) protein (300aa)
acriflavin resistance protein n=1 Tax=Leucothrix mucor RepID=UPI0003B4E49B
Uncharacterized protein {ECO:0000313|EMBL:EXL09608.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
binding-protein-dependent transport system inner membrane protein; K02054 putative spermidine/putrescine transport system permease protein rbh
SCNpilot_cont_750_p_scaffold_2272_3
BJP_IG2158_Rhodobacterales_64_37, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1634..2422
DNA (789bp) protein (263aa)
spermidine/putrescine ABC transporter permease n=1 Tax=Leucothrix mucor RepID=UPI0003B4C25B
ABC transporter permease; K02053 putative spermidine/putrescine transport system permease protein rbh
Tax=BJP_IG2158_Rhodobacterales_64_37
SCNpilot_cont_750_p_scaffold_2272_4
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2423..3481
DNA (1059bp) protein (353aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
UPI0003CF92CC related cluster n=1 Tax=unknown RepID=UPI0003CF92CC
ABC transporter
SCNpilot_cont_750_p_scaffold_2272_5
Halorubrum kocurii, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3600..4433)
DNA (834bp) protein (278aa)
ABC transporter n=1 Tax=Halorubrum kocurii JCM 14978 RepID=M0P635_9EURY
ABC transporter {ECO:0000313|EMBL:EMA65602.1}; TaxID=1230456 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum kocurii JCM 14978.;"
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_cont_750_p_scaffold_2272_6
blood disease bacterium R229, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4443..5198)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI0003682337
ssuC; alkanesulfonate ABC transporter; K15554 sulfonate transport system permease protein
Alkanesulfonate transport protein ABC superfamily, membrane component {ECO:0000313|EMBL:CCA82350.1}; TaxID=741978 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="blood disease bacterium R229.;"
SCNpilot_cont_750_p_scaffold_2272_7
Pseudomonas sp. SHC52, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5198..5977)
DNA (780bp) protein (260aa)
Binding-protein-dependent transport system inner membrane protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7YUI8_9RHIZ
Taurine transport system permease protein TauC {ECO:0000313|EMBL:CDF97157.1}; TaxID=984195 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. SHC52.;"
Taurine transport system permease protein TauC
SCNpilot_cont_750_p_scaffold_2272_8
unknown

Not on your lists

comp(6032..7021)
DNA (990bp) protein (330aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_2272_9
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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7281..8759
DNA (1479bp) protein (493aa)
Sulfatase n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AZI7_STRRD
sulfatase
Sulfatase {ECO:0000313|EMBL:ACZ85232.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
SCNpilot_cont_750_p_scaffold_2272_10
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8768..9463)
DNA (696bp) protein (232aa)
Putative transcriptional regulator n=2 Tax=Bordetella bronchiseptica RepID=Q7WJK9_BORBR
transcriptional regulator
Crp-like helix-turn-helix domain protein {ECO:0000313|EMBL:KCB40377.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
SCNpilot_cont_750_p_scaffold_2272_11
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9583..10554
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Microbacterium paraoxydans RepID=UPI000361940E
Putative cysteine-type sulfatase aerobic maturase {ECO:0000313|EMBL:ERK72206.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
SC5F1.02; hypothetical protein
SCNpilot_cont_750_p_scaffold_2272_12
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10600..11334)
DNA (735bp) protein (245aa)
Transcriptional regulator, GntR family protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D839_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EDQ33215.2}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
hypothetical protein; K03710 GntR family transcriptional regulator
SCNpilot_cont_750_p_scaffold_2272_13
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11466..11753
DNA (288bp) protein (96aa)
Altronate dehydratase {ECO:0000313|EMBL:EDQ35723.1}; EC=4.2.1.7 {ECO:0000313|EMBL:EDQ35723.1};; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
altronate hydrolase (EC:4.2.1.7); K01685 altronate hydrolase [EC:4.2.1.7]
D-galactarate dehydratase/Altronate n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CXU2_9RHIZ
SCNpilot_cont_750_p_scaffold_2272_14
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11800..12981
DNA (1182bp) protein (394aa)
garD; D-galactarate dehydratase GarD (EC:4.2.1.42); K01685 altronate hydrolase [EC:4.2.1.7] rbh
D-galactarate dehydratase GarD n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M901_9RHIZ
D-galactarate dehydratase GarD {ECO:0000313|EMBL:EKF18596.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_cont_750_p_scaffold_2272_15
Ahrensia sp. R2A130, Ahrensia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13117..14058
DNA (942bp) protein (314aa)
Phosphoglycerate dehydrogenase {ECO:0000313|EMBL:EFL90102.1}; EC=1.1.1.95 {ECO:0000313|EMBL:EFL90102.1};; TaxID=744979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ahrensia.;" source="Ahrensia sp. R2A130.;"
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] rbh
Phosphoglycerate dehydrogenase n=1 Tax=Ahrensia sp. R2A130 RepID=E0MJV2_9RHOB
SCNpilot_cont_750_p_scaffold_2272_16
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14055..15047
DNA (993bp) protein (331aa)
Malate dehydrogenase n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D833_9RHIZ
Malate/L-lactate dehydrogenase {ECO:0000313|EMBL:EDQ33211.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
malate/L-lactate dehydrogenase rbh
SCNpilot_cont_750_p_scaffold_2272_17
Prauserella sp. Am3, Prauserella, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15081..16247)
DNA (1167bp) protein (389aa)
L-alanine-DL-glutamate epimerase-like protein {ECO:0000313|EMBL:KID31482.1}; EC=4.2.1.6 {ECO:0000313|EMBL:KID31482.1};; TaxID=1515610 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Prauserella.;" source="Prauserella sp. Am3.;"
hypothetical protein n=1 Tax=Sciscionella marina RepID=UPI00035FFB9E
L-alanine-DL-glutamate epimerase-like protein
SCNpilot_cont_750_p_scaffold_2272_18
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16269..17360)
DNA (1092bp) protein (364aa)
Carbohydrate ABC transporter ATP-binding protein, CUT1 family n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SJ69_THEM7
sugar ABC transporter ATP-binding protein; K10112 maltose/maltodextrin transport system ATP-binding protein
Carbohydrate ABC transporter ATP-binding protein, CUT1 family {ECO:0000313|EMBL:ADU52093.1}; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
SCNpilot_cont_750_p_scaffold_2272_19
Prauserella sp. Am3, Prauserella, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17360..17518)
DNA (159bp) protein (53aa)
Uncharacterized protein {ECO:0000313|EMBL:KID28454.1}; TaxID=1515610 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Prauserella.;" source="Prauserella sp. Am3.;"
Displaying 19 items

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