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SCNpilot_cont_750_p_scaffold_2384

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_2384_1
unknown

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comp(3..152)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_2384_2
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

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232..735
DNA (504bp) protein (168aa)
Uncharacterized protein n=2 Tax=Pseudomonas aeruginosa RepID=U9FLX4_PSEAI
putative MarR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCNpilot_cont_750_p_scaffold_2384_3
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(710..1930)
DNA (1221bp) protein (407aa)
Beta-lactamase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UQZ3_METS4
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:ACA19666.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_750_p_scaffold_2384_4
unknown

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2029..2232
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_2384_5
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2385..3311
DNA (927bp) protein (309aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J3AXW7_9RHIZ
LysR family transcriptional regulator {ECO:0000313|EMBL:KJF70043.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_750_p_scaffold_2384_6
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3487..4296
DNA (810bp) protein (270aa)
Shikimate 5-dehydrogenase protein {ECO:0000313|EMBL:AIC25271.1}; EC=1.1.1.25 {ECO:0000313|EMBL:AIC25271.1};; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
shikimate dehydrogenase substrate binding domain-containing protein; K00014 shikimate dehydrogenase [EC:1.1.1.25]
Shikimate dehydrogenase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJM0_9RHIZ
SCNpilot_cont_750_p_scaffold_2384_7
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4410..5546
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D95698
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:AIC25272.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
branched-chain amino acid ABC transporter, amino acid-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein rbh
SCNpilot_cont_750_p_scaffold_2384_8
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5609..6487
DNA (879bp) protein (293aa)
ABC transporter permease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003006C24
Branched-chain amino acid ABC transporter permease protein {ECO:0000313|EMBL:AIC25273.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
high-affinity branched-chain amino acid transport system permease protein LivH; K01997 branched-chain amino acid transport system permease protein rbh
SCNpilot_cont_750_p_scaffold_2384_9
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6487..7464
DNA (978bp) protein (326aa)
ABC transporter permease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E80078
ABC transporter permease {ECO:0000313|EMBL:KJF70046.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
ABC transporter permease; K01998 branched-chain amino acid transport system permease protein rbh
SCNpilot_cont_750_p_scaffold_2384_10
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7461..8207
DNA (747bp) protein (249aa)
ABC transporter ATP-binding protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031C30EA
Branched-chain amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIC25275.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
branched-chain amino acid transport ATP-binding protein LivG; K01995 branched-chain amino acid transport system ATP-binding protein rbh
SCNpilot_cont_750_p_scaffold_2384_11
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8210..8941
DNA (732bp) protein (244aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Rhizobium sp. CF080 RepID=J2I5Y0_9RHIZ
Branched-chain amino acid ABC transporter ATPase {ECO:0000313|EMBL:KJF70048.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein rbh
SCNpilot_cont_750_p_scaffold_2384_12
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8988..9806
DNA (819bp) protein (273aa)
Putative calcium binding transcriptional regulatory protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6L5_PELHB
putative calcium binding transcriptional regulatory protein rbh
Putative calcium binding transcriptional regulatory protein {ECO:0000313|EMBL:AEQ51211.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_cont_750_p_scaffold_2384_13
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9826..11718
DNA (1893bp) protein (631aa)
4-hydroxyphenylpyruvate dioxygenase; K00457 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] rbh
3-keto-5-aminohexanoate cleavage protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031A7E32
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:EAS49675.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
SCNpilot_cont_750_p_scaffold_2384_14
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11832..12269)
DNA (438bp) protein (146aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000368329B
SCNpilot_cont_750_p_scaffold_2384_15
Haematobacter missouriensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12295..13113)
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI000381F1AF
Uncharacterized protein {ECO:0000313|EMBL:KFI32419.1}; TaxID=366616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter missouriensis.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_2384_16
Haematobacter missouriensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13189..14892)
DNA (1704bp) protein (568aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI0003696889
Heterodisulfide reductase {ECO:0000313|EMBL:KFI32416.1}; TaxID=366616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter missouriensis.;"
fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein rbh
SCNpilot_cont_750_p_scaffold_2384_17
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15102..15884
DNA (783bp) protein (261aa)
Regulatory protein, IclR n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQS9_POLNA
Transcriptional regulator, IclR family, C-terminal domain protein {ECO:0000313|EMBL:KCB41302.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
regulatory proteins, IclR
SCNpilot_cont_750_p_scaffold_2384_18
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15934..16872)
DNA (939bp) protein (313aa)
4-aminobutyrate aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
Glutamate-1-semialdehyde aminotransferase n=1 Tax=Rhizobium sp. AP16 RepID=J2WAP8_9RHIZ
Putative aminotransferase {ECO:0000313|EMBL:GAJ93663.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
Displaying 18 items

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