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SCNpilot_cont_750_p_scaffold_2411

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_2411_1
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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80..352
DNA (273bp) protein (91aa)
Amino acid ABC transporter n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JMT3_AGRRK
amino acid ABC transporter
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAJ92113.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_cont_750_p_scaffold_2411_2
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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408..1082
DNA (675bp) protein (225aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Phyllobacterium sp. YR531 RepID=J2W2G2_9RHIZ
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EJN06725.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
inner membrane amino-acid ABC transporter permease; K02029 polar amino acid transport system permease protein
SCNpilot_cont_750_p_scaffold_2411_3
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1079..1771
DNA (693bp) protein (231aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HV17_9RHIZ
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EJN06726.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
ABC transporter permease; K02029 polar amino acid transport system permease protein
SCNpilot_cont_750_p_scaffold_2411_4
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1787..2890
DNA (1104bp) protein (368aa)
NAD-dependent aldehyde dehydrogenase (EC:1.2.1.16); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
NAD-dependent aldehyde dehydrogenase n=1 Tax=Herbaspirillum sp. CF444 RepID=J3DA67_9BURK
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:EJL87834.1}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
SCNpilot_cont_750_p_scaffold_2411_5
unknown

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comp(2907..3140)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_2411_6
unknown

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comp(3165..3617)
DNA (453bp) protein (151aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_2411_7
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3699..3989)
DNA (291bp) protein (97aa)
transposase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003727E4B
Transposase {ECO:0000313|EMBL:KJF74630.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
transposase
SCNpilot_cont_750_p_scaffold_2411_8
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4225..5427
DNA (1203bp) protein (401aa)
Orf_Bo120 n=1 Tax=Rhizobium radiobacter RepID=A5WY39_RHIRD
Transposase {ECO:0000313|EMBL:KGE79641.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
transposase IS116/IS110/IS902 rbh
SCNpilot_cont_750_p_scaffold_2411_9
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5370..6776)
DNA (1407bp) protein (469aa)
transposase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003727E4B
Transposase {ECO:0000313|EMBL:KJF74630.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
transposase
SCNpilot_cont_750_p_scaffold_2411_10
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6842..7189)
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00035DD0F2
Isocitrate lyase {ECO:0000313|EMBL:KJF74631.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
transposase IS66 family, ORF2
SCNpilot_cont_750_p_scaffold_2411_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7186..7584)
DNA (399bp) protein (133aa)
Insertion sequence transposase protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3V6_9RHIZ
Insertion sequence transposase protein {ECO:0000313|EMBL:EYR83851.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
insertion sequence transposase; K07483 transposase
SCNpilot_cont_750_p_scaffold_2411_12
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7636..8028
DNA (393bp) protein (131aa)
aldehyde dehydrogenase (EC:1.2.1.16); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Aldehyde dehydrogenase n=2 Tax=Agrobacterium RepID=F0LC63_AGRSH
Aldehyde dehydrogenase {ECO:0000313|EMBL:ADY66673.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_cont_750_p_scaffold_2411_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8059..9003)
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DCEB20
Transcriptional regulator, LysR family {ECO:0000313|EMBL:KFC71670.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_750_p_scaffold_2411_14
unknown

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comp(9193..9315)
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_2411_15
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9349..11058
DNA (1710bp) protein (570aa)
glucose dehydrogenase (EC:1.1.99.10); K00115 glucose dehydrogenase (acceptor) [EC:1.1.99.10]
glucose dehydrogenase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000381397C
Uncharacterized protein {ECO:0000313|EMBL:KJS20621.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
SCNpilot_cont_750_p_scaffold_2411_16
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11102..11839
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5PQ77_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EXL06519.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_2411_17
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12144..13901
DNA (1758bp) protein (586aa)
Acetolactate synthase large subunit {ECO:0000313|EMBL:CDI12301.1}; EC=2.2.1.6 {ECO:0000313|EMBL:CDI12301.1};; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
ilvB; Acetolactate synthase large subunit (EC:2.2.1.6) rbh
Acetolactate synthase large subunit n=1 Tax=Rhizobium sp. IRBG74 RepID=U4QIP3_9RHIZ
SCNpilot_cont_750_p_scaffold_2411_18
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14021..14587)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M8A3_RHIL3
Uncharacterized protein {ECO:0000313|EMBL:KIV60938.1}; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_2411_19
unknown

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comp(14530..15009)
DNA (480bp) protein (160aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_2411_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15025..15432)
DNA (408bp) protein (136aa)
Transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EEV2_9RHIZ
Putative transcriptional regulator {ECO:0000313|EMBL:EYR77643.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
exsI; transcriptional regulator
SCNpilot_cont_750_p_scaffold_2411_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15433..15735)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CH01_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR77642.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_2411_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16140..16358
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQ10_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79580.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_2411_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16366..16740)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSI5_9RHIZ
Relaxase {ECO:0000313|EMBL:EYR79581.1}; Uncharacterized protein {ECO:0000313|EMBL:EYR79594.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Displaying 23 items

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