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SCNpilot_cont_750_p_scaffold_2472

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_2472_1
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

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1..570
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AUY0_9BACT
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
SCNpilot_cont_750_p_scaffold_2472_2
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1190..1501
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PMA6_RHIML
Uncharacterized protein {ECO:0000313|EMBL:KKB84633.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_2472_3
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1671..2183)
DNA (513bp) protein (171aa)
Putative nuclease protein n=2 Tax=Rhizobium RepID=L0LUI5_RHITR
Putative staphylococcal nuclease {ECO:0000313|EMBL:BAR63699.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
putative nuclease protein
SCNpilot_cont_750_p_scaffold_2472_4
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2180..4069)
DNA (1890bp) protein (630aa)
conjugal transfer protein TraG n=1 Tax=Sinorhizobium medicae RepID=UPI00037E760C
Conjugal transfer coupling protein TraG {ECO:0000313|EMBL:BAR63227.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
SCNpilot_cont_750_p_scaffold_2472_5
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4056..4271)
DNA (216bp) protein (72aa)
Conjugal transfer TraD family protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UKI3_SINMW
Conjugal transfer protein TraD {ECO:0000313|EMBL:BAR63702.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
conjugal transfer protein TraD
SCNpilot_cont_750_p_scaffold_2472_6
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4276..4572)
DNA (297bp) protein (99aa)
conjugal transfer protein TraC n=1 Tax=Rhizobium giardinii RepID=UPI000366FE03
Conjugal transfer protein Dtr system {ECO:0000313|EMBL:BAR63225.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
traC; conjugal transfer protein TraC
SCNpilot_cont_750_p_scaffold_2472_7
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4850..8158
DNA (3309bp) protein (1103aa)
Putative conjugal transfer protein n=2 Tax=Rhizobium leguminosarum RepID=Q1M9U3_RHIL3
Dtr system oriT relaxase {ECO:0000313|EMBL:BAR63224.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
traA; Dtr system oriT relaxase rbh
SCNpilot_cont_750_p_scaffold_2472_8
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8155..8736
DNA (582bp) protein (194aa)
Conjugal transfer protein F n=1 Tax=Rhizobium freirei PRF 81 RepID=N6TTB4_9RHIZ
Conjugative transfer signal peptidase TraF {ECO:0000313|EMBL:BAR63399.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
traF; putative conjugal transfer protein traF
SCNpilot_cont_750_p_scaffold_2472_9
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8759..9892
DNA (1134bp) protein (378aa)
Putative amidohydrolase n=1 Tax=Phyllobacterium sp. YR531 RepID=J2W0D9_9RHIZ
Putative amidohydrolase {ECO:0000313|EMBL:EJN05985.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
traB; conjugal transfer protein TraB rbh
SCNpilot_cont_750_p_scaffold_2472_10
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9908..10510
DNA (603bp) protein (201aa)
Conjugal transfer protein Dtr system n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K3V8_AGRVS
Conjugal transfer protein Dtr system {ECO:0000313|EMBL:BAR63398.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
traH; conjugal transfer protein TraH
SCNpilot_cont_750_p_scaffold_2472_11
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10532..11581)
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HG98_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESZ57094.1}; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C120A0.;"
SCNpilot_cont_750_p_scaffold_2472_12
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11578..11940)
DNA (363bp) protein (121aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
Ribonuclease VapC n=1 Tax=Sinorhizobium meliloti (strain AK83) RepID=F6EDI4_SINMK
PilT protein domain-containing protein
SCNpilot_cont_750_p_scaffold_2472_13
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12660..12977
DNA (318bp) protein (106aa)
Prokaryotic Transcriptional repressor TraM n=1 Tax=Rhizobium sp. CF080 RepID=J2T1W1_9RHIZ
Prokaryotic Transcriptional repressor TraM {ECO:0000313|EMBL:BAR63396.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
SCNpilot_cont_750_p_scaffold_2472_14
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12982..13686)
DNA (705bp) protein (235aa)
Autoinducer-binding domain protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IQ01_XANP2
Autoinducer-binding domain-containing protein {ECO:0000313|EMBL:BAR63395.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
autoinducer-binding domain-containing protein rbh
SCNpilot_cont_750_p_scaffold_2472_15
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14049..15347)
DNA (1299bp) protein (433aa)
Conjugal transfer protein TrbI n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8ADK9_RHIRD
Conjugal transfer protein TrbI {ECO:0000313|EMBL:BAR63394.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
trbI; conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
SCNpilot_cont_750_p_scaffold_2472_16
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15365..15820)
DNA (456bp) protein (152aa)
Conjugal transfer protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K3T3_AGRVS
Conjugal transfer protein TrbH {ECO:0000313|EMBL:BAR63393.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
trbH; conjugal transfer protein TrbH
SCNpilot_cont_750_p_scaffold_2472_17
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15825..16415)
DNA (591bp) protein (197aa)
P-type conjugative transfer protein TrbG n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K3T4_AGRVS
trbG; conjugal transfer protein TrbG; K03204 type IV secretion system protein VirB9
P-type conjugative transfer protein TrbG {ECO:0000313|EMBL:ACM39532.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
Displaying 17 items

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