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SCNpilot_cont_750_p_scaffold_2516

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_2516_1
unknown

Not on your lists

comp(1..153)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_2516_2
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(159..1142)
DNA (984bp) protein (328aa)
40-residue YVTN family beta-propeller repeat protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QS37_METTR
Surface antigen {ECO:0000313|EMBL:GAN76191.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
beta-propeller repeat-containing protein
SCNpilot_cont_750_p_scaffold_2516_3
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1127..2353)
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EJI8_METSB
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACK48991.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_750_p_scaffold_2516_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2363..2902
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07HI3_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIZ35763.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_750_p_scaffold_2516_5
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2908..4053
DNA (1146bp) protein (382aa)
dihydroneopterin aldolase (EC:4.1.2.25); K01633 dihydroneopterin aldolase [EC:4.1.2.25] rbh
Dihydroneopterin aldolase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BU42_GRABC
Uncharacterized protein {ECO:0000313|EMBL:AHJ62581.1}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
SCNpilot_cont_750_p_scaffold_2516_6
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4050..4649
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000367E3A1
Aspartate/glutamate/uridylate kinase
Aspartate/glutamate/uridylate kinase {ECO:0000313|EMBL:CCJ06496.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_750_p_scaffold_2516_7
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4652..5191
DNA (540bp) protein (180aa)
Flavoprotein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BU40_GRABC
Flavoprotein {ECO:0000313|EMBL:GAN78117.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
flavoprotein
SCNpilot_cont_750_p_scaffold_2516_8
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5184..6617
DNA (1434bp) protein (478aa)
dihydropteroate synthase (EC:2.5.1.15); K00796 dihydropteroate synthase [EC:2.5.1.15] rbh
Dihydropteroate synthase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BU39_GRABC
Dihydropteroate synthase {ECO:0000313|EMBL:GAN78116.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_cont_750_p_scaffold_2516_9
Methylocapsa acidiphila, Methylocapsa, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6607..7161
DNA (555bp) protein (185aa)
Putative uncharacterized protein n=1 Tax=Methylocapsa acidiphila RepID=Q2VNQ2_METAI
Putative uncharacterized protein {ECO:0000313|EMBL:CAJ01580.2}; TaxID=133552 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocapsa.;" source="Methylocapsa acidiphila.;"
hypothetical protein; K09154 hypothetical protein
SCNpilot_cont_750_p_scaffold_2516_10
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7174..7758)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IL69_BEII9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB97269.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_750_p_scaffold_2516_11
Methylocapsa acidiphila, Methylocapsa, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7769..8803)
DNA (1035bp) protein (345aa)
Predicted transcriptional regulator/sugar kinase, (COG1548) n=1 Tax=Methylocapsa acidiphila RepID=Q2VNQ1_METAI
Predicted transcriptional regulator/sugar kinase, (COG1548) {ECO:0000313|EMBL:CAJ01581.2}; TaxID=133552 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocapsa.;" source="Methylocapsa acidiphila.;"
H4MPT-linked C1 transfer pathway protein rbh
SCNpilot_cont_750_p_scaffold_2516_12
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8867..9580
DNA (714bp) protein (238aa)
phosphoribosylformimino-5-aminoimidazole carboxamide isomerase family protein; K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
Phosphoribosylformimino-5-aminoimidazole carboxamide isomerase family protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BU35_GRABC
Phosphoribosylformimino-5-aminoimidazole carboxamide isomerase family protein {ECO:0000313|EMBL:ABI61667.1}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
SCNpilot_cont_750_p_scaffold_2516_13
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9586..10092)
DNA (507bp) protein (169aa)
Triphosphoribosyl-dephospho-CoA synthase {ECO:0000256|SAAS:SAAS00100821}; EC=2.4.2.52 {ECO:0000256|SAAS:SAAS00100821};; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
aldehyde-activating protein n=1 Tax=Methyloferula stellata RepID=UPI00037C92D4
fae; Formaldehyde activating enzyme
SCNpilot_cont_750_p_scaffold_2516_14
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10197..11033)
DNA (837bp) protein (279aa)
Triphosphoribosyl-dephospho-CoA synthase {ECO:0000256|SAAS:SAAS00100821}; EC=2.4.2.52 {ECO:0000256|SAAS:SAAS00100821};; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
citG family protein; K05966 triphosphoribosyl-dephospho-CoA synthase [EC:2.7.8.25]
CitG family protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BU33_GRABC
SCNpilot_cont_750_p_scaffold_2516_15
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11030..11662)
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Serinicoccus marinus RepID=UPI0003B57612
Uncharacterized protein {ECO:0000313|EMBL:AIY16051.1}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
SCNpilot_cont_750_p_scaffold_2516_16
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11896..12798)
DNA (903bp) protein (301aa)
UPI0003CFD6A9 related cluster n=1 Tax=unknown RepID=UPI0003CFD6A9
30S ribosomal protein S6 modification protein {ECO:0000313|EMBL:ESZ21586.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
ribosomal protein S6 modification protein rbh
SCNpilot_cont_750_p_scaffold_2516_17
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12808..13464)
DNA (657bp) protein (219aa)
clpP; ATP-dependent Clp protease proteolytic subunit; K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] rbh
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9HCR1_GLUDA
SCNpilot_cont_750_p_scaffold_2516_18
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13528..14502)
DNA (975bp) protein (325aa)
Methenyltetrahydromethanopterin cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_00486}; EC=3.5.4.27 {ECO:0000256|HAMAP-Rule:MF_00486};; Methenyl-H4MPT cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_00486}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase (EC:3.5.4.27); K01499 methenyltetrahydromethanopterin cyclohydrolase [EC:3.5.4.27] rbh
Methenyltetrahydromethanopterin cyclohydrolase n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EIJ8_METSB
SCNpilot_cont_750_p_scaffold_2516_19
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14499..15659)
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZBU8_AZOL4
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CBS88928.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_cont_750_p_scaffold_2516_20
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15643..16131)
DNA (489bp) protein (163aa)
methylenetetrahydrofolate dehydrogenase (EC:1.5.1.5); K10714 methylene-tetrahydromethanopterin dehydrogenase [EC:1.5.1.-]
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00035CFB21
Methylenetetrahydromethanopterin dehydrogenase (NAD+/NADP+) {ECO:0000313|EMBL:GAN76721.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_cont_750_p_scaffold_2516_21
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16107..16427)
DNA (321bp) protein (107aa)
methylene-tetrahydromethanopterin dehydrogenase; K10714 methylene-tetrahydromethanopterin dehydrogenase [EC:1.5.1.-]
UPI0003CFBA80 related cluster n=1 Tax=unknown RepID=UPI0003CFBA80
NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase {ECO:0000313|EMBL:ESZ21589.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
SCNpilot_cont_750_p_scaffold_2516_22
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16446..17474)
DNA (1029bp) protein (343aa)
GHMP kinase n=1 Tax=Methylocystis rosea RepID=UPI000377D1BA
beta-ribofuranosylaminobenzene 5\'-phosphate synthase family rbh
Beta-ribofuranosylaminobenzene 5\'-phosphate synthase family {ECO:0000313|EMBL:CCJ08273.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_750_p_scaffold_2516_23
uncultured Methylocystis sp. GSC357, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17529..17906
DNA (378bp) protein (126aa)
4a-hydroxytetrahydrobiopterin dehydratase {ECO:0000256|SAAS:SAAS00118034}; EC=4.2.1.96 {ECO:0000256|SAAS:SAAS00118034};; TaxID=373382 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis; environmental samples.;" source="uncultured Methylocystis sp. GSC357.;"
Putative pterin-carbinolamine dehydratase n=1 Tax=uncultured Methylocystis sp. GSC357 RepID=Q0ZKY0_9RHIZ
transcriptional coactivator/pterin dehydratase
SCNpilot_cont_750_p_scaffold_2516_24
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17922..18527
DNA (606bp) protein (202aa)
Tungsten-containing formylmethanofuran dehydrogenase, subunit B {ECO:0000313|EMBL:AHJ62598.1}; EC=1.2.99.5 {ECO:0000313|EMBL:AHJ62598.1};; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
tungsten-containing formylmethanofuran dehydrogenase, subunit B (EC:1.2.99.5); K00201 formylmethanofuran dehydrogenase subunit B [EC:1.2.99.5]
Tungsten-containing formylmethanofuran dehydrogenase, subunit B n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BU26_GRABC
Displaying 24 items

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