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SCNpilot_cont_750_p_scaffold_2990

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_2990_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..301)
DNA (300bp) protein (100aa)
RNA polymerase sigma factor RpoH n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ24_9GAMM
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
alternative sigma factor RpoH; K03089 RNA polymerase sigma-32 factor
SCNpilot_cont_750_p_scaffold_2990_2
Burkholderia sp. YI23, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(530..2299)
DNA (1770bp) protein (590aa)
gamma-glutamyltransferase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] rbh
gamma-glutamyltranspeptidase n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00038173F8
Gamma-glutamyltransferase {ECO:0000313|EMBL:AET91095.1}; TaxID=1097668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
SCNpilot_cont_750_p_scaffold_2990_3
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(2370..2675)
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00037B5B28
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:EYT60287.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
Antibiotic biosynthesis monooxygenase
SCNpilot_cont_750_p_scaffold_2990_4
Xylella fastidiosa, Xylella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2710..3702)
DNA (993bp) protein (331aa)
scrK; fructokinase (EC:2.7.1.4); K00847 fructokinase [EC:2.7.1.4] rbh
fructokinase n=1 Tax=Xanthomonas sp. M97 RepID=UPI00039DFB93
Fructokinase {ECO:0000313|EMBL:EWS77262.1}; TaxID=1444770 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella.;" source="Xylella fastidiosa PLS229.;"
SCNpilot_cont_750_p_scaffold_2990_5
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3711..4547)
DNA (837bp) protein (279aa)
Aldo/keto reductase, diketogulonate reductase n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L341_FRAAD
aldo/keto reductase, diketogulonate reductase rbh
Aldo/keto reductase, diketogulonate reductase {ECO:0000313|EMBL:AFC84839.1}; Flags: Precursor;; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
SCNpilot_cont_750_p_scaffold_2990_6
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4610..5896)
DNA (1287bp) protein (429aa)
L-fucose:H+ symporter permease n=1 Tax=Xanthomonas campestris pv. raphani 756C RepID=G0CII4_XANCA
fucP; L-fucose:H+ symporter permease; K02429 MFS transporter, FHS family, L-fucose permease rbh
Strain LMCP11 contig_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ28046.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
SCNpilot_cont_750_p_scaffold_2990_7
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5953..7965)
DNA (2013bp) protein (671aa)
hypothetical protein; K00316 spermidine dehydrogenase [EC:1.5.99.6]
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z619_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59801.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_750_p_scaffold_2990_8
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7981..10545)
DNA (2565bp) protein (855aa)
TonB-dependent receptor n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JXA9_STEMA
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
TonB-dependent receptor {ECO:0000313|EMBL:AEM51068.1}; Flags: Precursor;; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
SCNpilot_cont_750_p_scaffold_2990_9
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10812..11759)
DNA (948bp) protein (316aa)
transcriptional regulator n=1 Tax=Xanthomonas sacchari RepID=UPI000262A383
Transcriptional regulator {ECO:0000313|EMBL:KGI78134.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
transcriptional regulator; K02529 LacI family transcriptional regulator
SCNpilot_cont_750_p_scaffold_2990_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12031..12750)
DNA (720bp) protein (240aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WX87_9GAMM
SCNpilot_cont_750_p_scaffold_2990_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12747..13598)
DNA (852bp) protein (284aa)
Response regulator containing a CheY-like receiver domain and a GGDEF domain n=1 Tax=Rhodanobacter denitrificans RepID=I4WX88_9GAMM
response regulator containing a CheY-like receiver domain and a GGDEF domain rbh
Response regulator containing a CheY-like receiver domain and a GGDEF domain {ECO:0000313|EMBL:AGG90594.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_p_scaffold_2990_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13715..14032)
DNA (318bp) protein (106aa)
Cell division protein FtsX n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WTA7_9GAMM
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
cell division protein
Displaying 12 items

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